RNA id: XM_034303607.1


Basic Information

Item Value
RNA id XM_034303607.1
length 1440
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC117597066
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6779995 ~ 6789815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCTGTACCTGTGACACCTGCAGAAAGCgctcaaaacacacaacagagaCGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTACAGAAAGCGGCTCAAAAACACCAACAGAGACGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCTAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAAGAACAAGGTGCAACCTGCATCATTTACAGAAGGCTCAGAAACTCCAAAAGAGACTCTGCAAAATGTCTTTGTGAAACTATCAGCGGGGACCATGCCAGGGCAACTCTctaaaacaaagaagaagacCTCGACTAGCCGCAATGAGAAAAGTGCAGAAAGGAAGCAGGTAAGTGTGAAGCCAGCCTCCAAACTCCCAGGGAAAAAATGCATACAGGGCAAAGAGGCCGGTGTGAAGATAAATTTACCAAGCTCGATGAGGATCTCTGCTATgaaggaggaaaggaagaagACAACACAGTATGGGCAAGAAAAGAAGCCTACAGAAAGGAAGGAGACGACCTCAAATAGGCTTAatatgaaaaaagcagaaacGAAGCAGGTCAAAGAGGCCCATGTGAGGACCACTGCgatgaggaaagaaaaggaggaaaagaggacAACAACCCTGCATGGCCAAGAAAAGAAGACTGCACAAAGGAAGGAGACGACTTCAAATAGGCCTAATATGAAAACATCCGAAACAAAGCCGGTCATTGTGAGTCCTATCTCAAAACTCCCAGGGACGAAACGCATAGAGGTCAAAGAGGCCCATGTGAGGACAAATTTACGAAGCTCAGCGGGGACCACTGCaatgaggaaagaaaaggagaaaaggaaggAGATGACCCTGCGTGGCCAAGACaggaaggaggaaaagaaagaaatgaccCTATTCAAGTCGGAGGATGAAATGGCAAAGTTGATGGAGGTACTGATGGAGTTAGCCTTTTCTTCTTACATGGAATACAAGAAAAGGGTGAGAGATCCACATGCATTCAGTTCCAAAAAGATGATCCCTGAGGGAAACAGAAACGGCACGACTCTGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCAACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCGACTCTGTCTGAGGGAAACATGAAGAGCCCGATTCTGACTCCGTCTGAGGGAAACATAAACAGCacgactctgactctgactctgccCCCCATCACAGACAAGCAAGAGCTCACTGGCGGGTTGCCTAATTTTGGAAACAACTGCTACGTTAACATAAGTCTGCAGTGTCTGTTCACAGCTGAGTCTTTTTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71581 lncRNA downstream 137810 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 177769 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA downstream 177769 6588011 ~ 6602226 (-) True LOC113547257
TU71370 lncRNA downstream 384924 6394865 ~ 6395071 (-) True G60333
TU71365 lncRNA downstream 389918 6389703 ~ 6390077 (-) True G60328
TU71790 lncRNA upstream 88829 6878644 ~ 6881335 (-) True G60669
TU71867 lncRNA upstream 440839 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 452310 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 651447 7441262 ~ 7538818 (-) True G60846
TU72015 lncRNA upstream 693306 7483121 ~ 7483703 (-) True G60852
XM_034303606.1 mRNA downstream 7 6778356 ~ 6779988 (-) True LOC117597065
XM_034304050.1 mRNA downstream 1955 6775979 ~ 6778040 (-) True LOC117597185
XM_026947504.2 mRNA downstream 167153 6602800 ~ 6612842 (-) True LOC113547256
XM_026947558.2 mRNA downstream 248775 6518463 ~ 6531220 (-) False mylk4a
XM_034303608.1 mRNA upstream 5270 6795085 ~ 6798486 (-) True LOC117597067
XM_034303462.1 mRNA upstream 20314 6810129 ~ 6812432 (-) True LOC117597003
XM_034303457.1 mRNA upstream 47664 6837479 ~ 6868065 (-) True LOC117597000
XM_034303456.1 mRNA upstream 47664 6837479 ~ 6848841 (-) False LOC117597000
XM_034303454.1 mRNA upstream 47664 6837479 ~ 6848841 (-) False LOC117597000
trnae-cuc_12 other downstream 336180 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 599036 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 820450 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 849796 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1294198 5478542 ~ 5485797 (-) False cldn1
TU71817 other upstream 92654 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 1785691 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2193419 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2525034 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2548011 9337826 ~ 9338745 (-) True G61537

Expression Profile