RNA id: XM_034303609.1


Basic Information

Item Value
RNA id XM_034303609.1
length 2714
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC117597068
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6869370 ~ 6912573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACATTTTTACCTCAGTGCAGAAAAAGGAAACAGGAGCAAagagacatttttcaaattcagACTTTGTTTCTTCAgataaatcattttcttttattgtgaAGGAGTTCAGTGAAAATTCAGAATGCTCTGCTGCCCCTGTTTTTGGTCGCAGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTGCAGAAAGCGactcaaaaacacaaacagagacacCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAAGAAGAACAAGGTGCATCCTTCAGTACCTGTGACACCTGCAGAAAGCGGCTCAAAAACACCAACAGAGACGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTACAGAAAGCGGCTCAAAAACACCAACAGAGACGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTACAGAAAGCGGCTCAAAAACACCAACAGAGACGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCTAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAAGAACAAGGTGCAACCTGCATCATTTACAGAAGGCAGCTCAGAAACTCCAAAAGAGACTCTGCAAAATGTCTTTGTGAAACTATCAGCGGGGACCATGCCAGGGCAACTCTctaaaacaaagaagaagacCTCGACTAGCCGCAATGAGAAAAGTGCAGAAAGGAAGCAGGTAAGTGTGAAGCCAGCCTCCAAACTCCCAGGGAAAAAATGCATACAGGGCAAAGAGGCCGGTGTGAAGATAAATTTACCAAGCTCGATGAGGATCTCTGCTATgaaggaggaaaggaagaagACAACACAGTATGGGCAAGAAAAGAAGCCTACAGAAAGGACGGAGACGACCTCAAATAGGCTTAatatgaaaaaagcagaaacGAAGCAGGTCAGTGTGAGGCCGACCTCAAAACTCCCAGGGACGAAACGCTTAGAGGTCAAAGAGGCCCATGTGAGGACCACTGCgatgaggaaagaaaaggaggaaaagaggacAACAACCCTGCATGGCCAAGAAAAGAAGACTGCACAAAGGAAGGAGACGACCTCAAATAGGCCTAATATGAAAACATCCGAAACAAAGCCGGTCATTGTGAGTCCTATCTCAAAACACCCATGGACGAAACGCATAGAGGTCAAAGAGGCCCATGTGAGGACAAATTTACAAAGCTCAGCGGGGACCACTGCaatgaggaaagaaaaggaggaaaggaaggagATGACCCTGCGTGGCCAAGACaggaaggaggaaaagaaagaaatgatccTATTCAAGTCGGAGGATGAAATGGCAAAGTTGATGGAGGTACTGATGGAGTTGGCCTTTTCTTCTTACATGGAATACAAGAAAAGGGTGAGAGATCCACATGCATTCAGTTCCAAAAAGATGATCCCTGAGGGAAACATAAAGAGCCCGATTCCGACTCCGTCTGAGGGAAACATAAACAGCacgactctgactctgactctgccCCCCATCACAGACAAGCAAGAGCTCACTGGCGGGTTGCCTAATTTTGGAAACAACTGCTACGTTAACGCAAGTCTGCAGTGTCTGTTCACAGCTGAGTCTTTTTGCGGAGAGCTCTCCTACCTGCTGGACAATTCTGTCCACAAACTAGAGGACACATTCCTCAGATGTTTTGTGGAGTTGTCGAGGTTGAGAAAGAGCTCTGAAGTTCAAGGTGGCATCAGCAAGGATTCTCTCCTCCTGGCCCTGATTGAATCAGCTACAGACATCAATCCAGAATTCACCATCAGTCAACAGAACgacgCCCATGAATTCCTCTGCCACTGTCTGACCCAAATGGAGGAGTCTGGGCGATGGCTGGGTTGGCAAGAGGATGTGGACCCTAGATGCCCAGTCAGGGCCAATTTCAAGTTCAAGATGAGGAACATTATAACATGCTCCAGCTGTGGATCCCAGCAGAACAACAAAGTGGAAGTGTTTAATCACATCTCTCTGCCCCTGGTGCACAACTCAGTGGACCAGTGCCTCTATGACATAGTTAATAACCCCACAGAGTTAGAGAGCAAATGCAAGGTGTGTGTAGGAGAAGTTGCCAACTCCAGGTGGACGTTCCACACTCTGCCCAGgTTTCTGATTCTGCAGCTGAACAGGTTCAAAGTGACTGAATATTACACAGTCGTCAAGCTGCATATGCCAGTGGAGATCAAACCTGAGCTGCAGATAAACTGTCATCCTGAATCCGATATGCCTGGAATAGAGAACAGCAAAGCTGaggccagagagacagacagaaatgaactgGGTGGATCAGCTGCCACGTATCGACTGATCAGTGTCCTCAGCCATGTTGGAAGCACAACATTATGTGGACATTATCTGAGTGATTGTTCCAGTTCCAGTCACCAGTGGATGACCTACAATGACCCGCTGGTCACTCTGACCACCGAGGACGGCGTGTTAAAGATGAGGTCGACTAGCGCCTATGTGCTCCTCTATGAGAGAGTCAGCACTGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71799 lncRNA downstream 76418 6785327 ~ 6792952 (-) True G60672
TU71581 lncRNA downstream 227185 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 267144 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA downstream 267144 6588011 ~ 6602226 (-) True LOC113547257
TU71370 lncRNA downstream 474299 6394865 ~ 6395071 (-) True G60333
TU71867 lncRNA upstream 318081 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 329552 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 528689 7441262 ~ 7538818 (-) True G60846
TU72015 lncRNA upstream 570548 7483121 ~ 7483703 (-) True G60852
TU71992 lncRNA upstream 582829 7495402 ~ 7500703 (-) True G60830
XM_034303457.1 mRNA downstream 1305 6837479 ~ 6868065 (-) True LOC117597000
XM_034303459.1 mRNA downstream 15156 6849774 ~ 6854214 (-) True LOC117597001
XM_034303460.1 mRNA downstream 15156 6850382 ~ 6854214 (-) False LOC117597001
XM_034303456.1 mRNA downstream 20529 6837479 ~ 6848841 (-) False LOC117597000
XM_034303454.1 mRNA downstream 20529 6837479 ~ 6848841 (-) False LOC117597000
XM_034303444.1 mRNA upstream 44199 6956772 ~ 6959079 (-) True LOC113526837
XM_026914411.2 mRNA upstream 76707 6989280 ~ 6995460 (-) True LOC113526956
XM_026914102.2 mRNA upstream 102455 7015028 ~ 7018277 (-) True exosc4
XM_026914035.2 mRNA upstream 109160 7021733 ~ 7042789 (-) True prkacbb
XM_034304126.1 mRNA upstream 136551 7049124 ~ 7082000 (-) True LOC113526634
trnae-cuc_12 other downstream 425555 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 688411 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 909825 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 939171 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1383573 5478542 ~ 5485797 (-) False cldn1
XR_004578041.1 other upstream 1662933 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2070661 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2402276 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2425253 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 2614001 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile