RNA id: XM_034303625.1


Basic Information

Item Value
RNA id XM_034303625.1
length 2859
RNA type mRNA
GC content 0.54
exon number 19
gene id si:ch73-182a11.2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28722850 ~ 28736753 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACCCCGATAGCTATAACTATACTGAGATTATTCAGTAGGACTGGACACAGACACTGTGAGCTTCTCTAGACTTGTTGTGTCTTAAATCAGTTGAGGGACACATTATGTAAGCTGTTTGGGTAAAATATTGTTACAGGACATTTTTTGTATCCGTGAAAACCGGCGATAATGTCCGCTTGCTCAGAACCGACCGAGTTTACTGCGGAGGCAGTGGAGAGGGCTCTTCAGCAGCTGTACTATGATCCGGATATGGTGCAGAAAAACGTGGCCCAAAAGTGGCTGGCGCAGGCCCAAGCGTCACCGCAGGCGTGGCACTTTTGCTGGGCATTGCTGAGCCCGGACAAGGTGCCTGAGATCCAGTTTTTCGGTGCGAGCACACTACACGGCAAAATCTCCAGCCACTGGCACGACCTCAGTTCTGAGCTTCGTGAGTCTCTCCGCTCTCAACTCGTCACCCACGTGTGCCACTTCGCCCTCGGCCCCAAGATGGTGCTGACGCGCCTCTGCGTGGCCCTGGCGTCTCTGATCCTCCGCACGCTCCTCGACTCCTGGCCCAGCGCCGTGCCCGATCTCCTGCAGGCGTTCCAGAGCGGAGAGGGCTCAGCTGAGGCGGCCGGCCGGCACCTGGCCCTGTTAGAGGTGCTCACCGTGTTGCCTGAGGAGCTCCTGAGCAGGAAGTTCACACCAGGGAATCGTGCCAGGCTTCAGGCTGCCCTGGCGCAAGAGTGGACGTCGTTGTGTCCACTGCTGAGGGAGCTGCTGCGGTGTGAAGGCTCGGCATGCAGCGTGAAGGAGCGAGCGCTGCGCTGTCTGCCCTCCTGGCTCACGCTCGGCGTCGATTTGGGTCAGTGTGAAGGAGTGCTGCAGGATAGCTTGGCCATACTTAAAGTGCCTGAGCTTTTTGACACGGCTGTGGAGAGCGTCGTCGGTGCCCTTTCAGTGCCTGACTGGCAGAGGTCCGCGGACAGTCTGGTGAAGTTGTTGCCCCGTGTGCTGGAGCTCCAGGAGGAGCTGAAGAGGGCAGTGCAGGACAGAGACATGGAGACGTCTCACGGAATCTGCCGCATTGTCGTCGCTCTCGGCGAAACCCACTGCAGAACATTGTTGGAACAGATCGGACACTGGCAGGGTTTCCAGGCTCTGGTCAGTATGATTCTGTCCTGCACTGCGATTCCTGGCCACTACCCAGTGGACGAGACTTCcagctcactcactctcacattcTGGTACACACTGCAGGATGACATCATGTCACTGGAAGCAGAGAAGCAGACGTTTTACCTGCAGCTGTACAGACCCGTTTACTTCCAGCTGGTTGACGTTCTGCTGCACAAAGCACGCTTTCCTAACGAGCACGACTACGCCTCATGGTCTTCTGATGACAAGGAACAATTCAGGACATACAGAGTCGATATCTCAGAcactctgatgtgtgtgtatgagctgcTGGGCCCCGAACTGTTGCGCAAACTGTACGACAAACTTGGTGTGTTGCTGACCGACACGACGCACTCACACTCCTCCTCGTGGCAGGATATAGAGGCTCTGCTGTTCGGTTTCCAGTCCATAGCTGACACTGTGGACGTCAGTTACTCAGACGTGATCCCAGGTCTGATCGGCCTCATCCCTCTCATCTCCGCGAACAGCGTTCAGCTCACAGAGACCGTCATGCTCACACTAGGCTCACTGGCTGAGTGGCTGGCCGATCACCCAGTCATGGTGCCCGCTGTCCTGTGTGTCGTCCTGCCCGCCCTGTCAGACGCTGATCTCTCCGTGGCTGCCGTCTCCACGCTGAAGAGAATCTGCCGCGAGTGCAAGCGTCACCTTTACCCGCACGCCAACGACATCCTGGCATCCTCACAGgatGCACTCGTTAAGCGGATCCACAAGaGCCCTCAGAGCACGTGGCTCATGCAGGCTCTGGGATTTTTACTCTCGGCCATGCCGGATGAGGAGATTCCGGAAAGactgctctctctcctctcgcCTCATATCCAGGACCTGGAGCGGCTGGCCAATCAGGCGCCCTCTCCTGCCACTAAACACTCCACGCTTCAGGTTCTGGGCCTGATCTCCAGCCTCTTCTCCACTCTCGACTTGAACACACACGGCGAAGGACTGGACGGGGTTAAAGGTCGTCGATTTGCTGCTCACAACAATCCGGTAGTAGTCGTGCTACAGCAAGTGTTTCCTCTCATCCAAACCCTTCTGAGCAAGTGGCTGAAAGACACCGAAGTGGTGGAGGCCTCATGTGCTGTTTTTGAGAAATCTCTGAAGACCCTTGGCGGTGATTTTGCTCCTCTCGTACCTCAACTCTGTGAGCTGATTAGTCAGCTGTTCAGCGCCTACCCACAAGCCTCTGCTTTGGATCTCATACAACAGCTGCTTCAGATATTTGCCTGTGAGAAGGAACACGTCTCATCAATCGCTGCAGTTCTGGAACTTGTCACAAACGTCACCATGTCTGTTTTTCAGCATGGTGCAAGAGAACATCCTGACGTGGTCGAGTCGTTTATGAAGCTTCATGCACAGGTTTTGAAAAGGAAACCAGATCTGTATCGCTCAGAGGGTCTCGATATCAGAGTGGTCTTCTACTGTGGAATTTTAGCTTTCAAATTTCCAGAGACGCCCACTCTCAAGTCCACATGTGTGCTGTTTaaTTTCAACTTGTGAGGTGAAATGAACTATAAATCATTAGCAGATTGCGAACCTCATCCTATTATATGTCATAAGCACtagactttctttttcttctgctcAAAATACACTGTACATATTACTCCTGTAAGTACGACACTTCTTAAACCAGTCCATTTTTGATAacagatgttttatttagtttctttGTCTTTAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577998.1 lncRNA downstream 7865 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 57177 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 254049 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 342360 28343134 ~ 28383460 (-) True G72709
TU86345 lncRNA upstream 46170 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 50870 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 95631 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 155263 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 155263 28892016 ~ 28896799 (-) False LOC117597038
XM_026936341.2 mRNA downstream 14112 28708029 ~ 28711708 (-) True prdx1
XM_034303626.1 mRNA downstream 14731 28708029 ~ 28711089 (-) False prdx1
XM_026936878.2 mRNA downstream 19297 28699669 ~ 28706523 (-) True zte38
XM_026937185.2 mRNA downstream 35808 28686556 ~ 28690012 (-) True uck2b
XM_026937186.2 mRNA downstream 40244 28682472 ~ 28685576 (-) True czib
XM_034303988.1 mRNA upstream 8877 28745630 ~ 28756644 (-) True LOC113540626
XM_026936110.2 mRNA upstream 25341 28762094 ~ 28763277 (-) True arl14
XM_026936500.2 mRNA upstream 26551 28763304 ~ 28785755 (-) False ppm1la
XM_034303990.1 mRNA upstream 26551 28763304 ~ 28785755 (-) False ppm1la
XM_026936499.2 mRNA upstream 26551 28763304 ~ 28773760 (-) True ppm1la
XR_004578096.1 other downstream 73395 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 489015 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 489553 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 684035 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1101012 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 136825 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 136827 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 145574 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 411885 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 786641 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile