RNA id: XM_034303646.1


Basic Information

Item Value
RNA id XM_034303646.1
length 6158
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC113540574
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23054500 ~ 23103788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCAGTTTTACACACTGAGCTATAGTGAGCCTCTCGGCTTTCACCTGGTTTCTCTTTACTATTCGGCGCCTAGCTGGAGGTTCTCTCGTAATGTAAAAAGCAAGTGGGCAACACACAGCCTGCacactcctccacacacacactcctccacacacacctcctgcacactcctgcacactcctccacacactcctcctgcTGCGCCTTGGGCATCCTTCTCTCACCTCGGACCCGACTGCATGGAGGAAGAGAATTCCTGATATTTTGAAGTCTGTGTGCTGCTTGACTGGACAGTTTGTGGGGATTGCTGCAGCCCTCGTGTCCACCTCCTGCACTCACTCCTCAGGTAAACAGTCCACAACCTGCGAGACAAATCCTTCTGGAACTTTCGACAGCTTTCAGTTTTTCACTTCGTGAGCCAGCATTAATTCTGTCATGCAGTTGATGTGAACTGACTCCAGCATCGTTAAAGCAAAGGTGCTTCTGCTTCATTCCACAATGAAGGACGACTTTACTGATGAGGAGGACGTGCAATCCTTTGGCTATAAACGGTTTGgtATCCAGGAGGGGAATGAATGTACTAAATGTAAAAACGACTGGGCACTAAGGGCAGCCATTGCTCTCCTGTACGTCCTGTGTGCACTGCTCACAATAGCTGTGGCTGTATTAGGATACAAAGtggTTCAGAGAATGGATGATGTAACTGAAGGGATGGAGAACTATGAAGGCAAAATTATTGCTGTAGAGACAGACTTGAAAAAGCTTGATGATCAAACAGGAGAGAAGTCAGAGAATGCCACAAATGAAATCCTATCATTCAAGGCAGAAATCCAGACATTACAGAACCAAATTAATGACATTGCCCTGAGCGCATCTAACAACAGGGCAGCTTTGGATGAGCTACGGGTTGTAGGTGAGGATATGCAAAGTGGCCATGTATCACTGAGAGACCTTCTAGAGAGCAATACCAACACCATCCTCACTGTCAACCGTACTCTAACGACATACAACAACTTGATTGGTGGACTGAAGTCAGATACAGAACGGCTCCAATCAGATCTTCAGGTACAGATAAGGGAACAGAGTCGCTCCACCCACAGCCTTAATATTCTTAACTTCACGCAGACTCAGCAAAGAAGTCTCATCAGCACCCTCCAGAGTTCAGTGGAGGATACCAGCCAGGCAGTCCAGAAGCTGAAGAATGACTACCAGAGCCTACAGCAGGTGGCCAGGCAGACCAAGGCAGATGCTGACTGGCTCAGAGAAAAAGTGCAGAACCTCCAGTTGCTGACTGCTAACAACTCAGCACTGACCCGTTCAAACAGTGATGCACTTGAGGACATAGCATCACAGCTCAGTTCACTGTCTGAGCAGATTCAGAATGCCTCAACTATAACAGACAATCATGACCAGAATCTGCGTGAGCTCATGGATCAACAGCGCGATCATGACAATGCCACCACCAACAGGTTTGACACTTTGGAGGCACGTCTGGATCGCAATGAGGAGGATATGGACCGCATCACAGGGAATGTGAGCGTTGCTACACAGCTGCTAGGCTCCATCAGTACTGACTTGAATGGTCTTCGCACCTGTACTGAGACAGTGACAAGGCACTCGGACCTGCTGCTGGCTCTCAACAGCAGCATTGTGGAAGCCAGGGCAGATGGCACTGAGCTCAAAACTCAGCAAGAAGAGCTTGCTGTCAGGCTTGACAAAGAAGTGAGCAGCCTCTCCATAGTCATGGAAGAAATGAAACTGGTGGACAGCAAGCACTCCCAACTCATAACCAACTTCACTATCCTTCAAGGTCCTCCTGGTCCTAGAGGCCCTCGGGGGGATAAAGGACCCCAGGGGCCTGCAGGAAAACAAGGTGAGAAAGGTGACAGTGGAGAAAAGGGTGCTCCAGGTGTGCCAGGGCCTAAAGGAGACAGAGGCCCCCCTGGAATTCCAGGGGTCCCTGGCTTCAAAGGTCCTCCTGGACCAAGGGGAAGCCCTGGGTCAAAGGGCTCAAGAGGATCAGGGGGTCGTGCTGGGCCTCCAGGGGAGAGGGGTGACCCTGGTTTACCTGGTCTTGCTGGCAGAGATGGTCAACCAGGTCCTCAGGGGCCTCAGGGGCCCCCAGGGCCACAAGGGCCAGTGGGACCTGCAGGACCACAAGGACCTCCTGGCCCTGCTGGTCCTATTGGTCTACAGGGACCACCTGGCCCAACTGGACCTCCTCCTCAACTGGCTAAACCTTTGCAACCAATAGGACCACAAAGCTCAATGTCCCGTCAAGTTTATGAACCTCCTCCCACCAGCACACCAGGATGCCCACCTCAGTGGAAGAGCTACAAAGCCAAGTGCTACTACTTTTCAGCTCCATCAGAGCGATTGAATTACGATGAAGcaaaagaaatgtgcaaaaataagaCTTCTACTATGCTTACCATCCACAATGAGGATGAACAGCTTTGGATTCGGAGGCAAATTGCAGGAAAGGGTTACTTTTGGCTGGGTCTTACAGATGTGGTAGAGGAAAACAACTGGAGATGGGTTGATGGGACCCTCCCCTCCTATACGAATTGGAAACCAGGCCAACCAGATAACTGGAGCCATGGCCATGAAGAAGGAGAAGATTGCGCAGGACTCATCCATGAGGGCAAaaaagaagaggGCCGAGCTCAGacttgtgttgttgtttttcctgtttatatCCCGGCGATGCCTCTTTTCACGTCCAATCCTTTTGATCAAGATGTTGagaaagcAACCAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATACTGGACATATGCGATAAGATAGGACAGTCACGCACCGGACCTAAAGAATGCCTTCGCTCCATTATGAGGCGAGTCAACCACAAGGATCCCCATGTAGCCATGCAGGCTCTGACATTATTAGGGGCTTGTGTGTCAAACTGTGGGAAGATCTTCCATTTGGAGGTGTGCTCACGAGAGTTTGCCAGTGAAGTTAGCAATGTCTTAAACAAGGGCCACCCAAAAGTATGTGAGAAGCTCAAGGCCCTCATGGTGGAATGGGCTGAGGACTTCCGAAATGACCCCCAGCTCAGTCTCATATCAGCTATGATCAAGAACCTGAGAGAGCAGGGTGTCACCTTTCCTGCTGTTGGCTCCCAGGCAGCAGAGCAAGCTAAAGCCAGCCCTGCTTTAGTGGCCAAAGACCCAGCAACATCCACAAccaagaaagaggaagaagactTGGCCAAAGCCATCGAGTTGTCTTTGAAGGAGCAGCGGCTGCAGAACCAGACCTCATTCTCTGGGCTTTACCCGAGCGCTAGCAGCCTTCTCACCTCCCACAAAGCCGAGGGAAGGAAAGTTCGGGCTATTTACGATTTTGAGGCAGCAGAGGACAACGAGCTAACCTTCAAATCTGGAGAGATCATCACCATCTTAGATGACAGtgacCCCAACTGGTGGAAAGGTGAGACATATCAGGGCGTGGGCCTTTTTCCATCTAACTTTGTCACAGCAGACCTGACAGCAGAGCCAGAGATGATGAAAACGGAGAAAAAGACAGTGCAGTTCAGCGAGGACATCCAGGTGGAGACCATTGAACCGGAGCCTGAGCCTGTCTACATAGATGAGGAGAAAATGGACCAGTTGCTTCAGATGATCCAGAGCGCAGATCCAACAGATAATGAGTCAGACGCCTGTGAGCTGCTCCAGCTGGAGGGTGCCTGCAACCAAATGGGTCCACTCATTGATCAGAAACTGGAAGAAATTGACAGGAAGCACTCGGAGCTGTCTGAGCTTAATGTGAAGGTGATGGAGGCACTCTCATTGTATGCCAAGCTGATGAATGAGGACCCCGTTTATGCCATGTATGCCAAACTGCAGAGCCAGCAGTACTACATGCAGCAACCCGGCACCTCACAGCAGGTATACCCAGGGCAGACAGCTGCAGGACAGTACGCTGTGGCTGCTACAGGGGTGCAGGGTTATAATGTTCCTGTGGAGCAGATTCCAGCCATGAACCAGGTCCCTGCTCCTTTACCAGGCCAACCGGCGCCCAGtgaTGTGCACATGTACATAGGCCAGGCGCCCATGTACAGTGCTCCTGCGGGCAGCATGGCTCCTGCTGAAGTGCAGCAGGCATACCAGAACACTGCCAGTGGACAGGCAGGCCTGACCCAAACTCCCATCTACACCTGTGCCAATCCCACAGACCCTCAACAGAGCCCTTACCCGGAAAAAGCCCTCTTATAGGACCCACATACACGGCTCTCGTCTCTCCAGTATACATACACACCCTTCTCATGAACAAAGAGGTGCAAGCTAACACTAAAACAACATGGCTACAGGGCACGGGAGCAGACTGATCCGCGCTCCTACATCATTGTCATTGTTTCTGATGAACATACACATGTCTATACACACTACATTCTCCCAGTAATGCACCCAGACAGTagaaaccacagaaacactcaGTCTGACCGAGTAAAAGACACCGAATATTGATTCACTACTGACTGGTTACATTATGCAATTTGAAGAAAGGCAGACAGGagttagtctctctctcactatctctctatctctatcttaCAGTCTCGCCCTCTCACTCTCTTGAAATATATGTCTTTCTGACtatctttctccctctctcgctatctctatctctcaagctacatctctctctcaatttCGCTCTAAATTGCTCTCTATCTTTATCTATTTCTCTCGATCCTGAtgtctatttctttcttttacattatgtcTCTATCTTGCTATCTATCTATAACTtatctccatctgtctctctatttctctacctcgctatctgtctgtctcgctgtctCCATCTTACCATTTTTGTTTCACCGTCTCTGTCTTTCAcaccctctgtctttctctgtctgtctctatctcacCATCTATGTCTCTCAAGTTCTATCTCTCTCGCACTCTTAAGTTATTTGACTGAGTTGGTGCCACCCTAATGCCTACTAAAGACTACACATTTACTTGTTTTGGAAAAGCTGAAACACAAATGGAGCATGCACATGTACATAATTTTCCTTTCTGTTATGGAACTTCTAACAGTCACAGGTGTTTGTTGCTACAGGGTTTCATAGGAGAACTTCAtttttccgtgtgtgtgtgtagaggtcaGTCTGCATACATAAGTGTAAGGTCTTCATGTGTCAGTAGTTCTGAAAAAGCATTGTAGCCATTCCACCTCTCCTGTGGGACTGTGTAGCACAGCACCAGCATGGTCCCTGACAGAGTGGCGCAGTCCGTACAGCAATCCCCGCAGTTCTCAGCAGGATGGCGCAGTCCATCTTCCTAGGGTCTTGAAGCATTTCTTTAACACAGTGTTAAATTGATTCTTAATTGTAgtatgtctttatttatttcgaCTGTCATTTTAAATGCACTGTACTTTGATATATGAGAATAAGGATGATATTCTGCTTAAAAATGTAGATGTGTATATATGAGAACCTGTGTTACAGCAGCTGCTCCTTCTGTTGAAAGAGCACAGTGAAAGGCATGTAGTAATATTACTCAGTGATGTTATGCACTTTTGATTTTGACTCACAGTCTCAAGTTTCAGCTCGCCTCAAgttgtaaaacattttaaccaCAGAAGGACTAAAGCGGCTAACtgaaaaattcaaatatttaggCACTGGGAATTTTAAGATTTCACTAGAACACTAAAATTGCCTTGTACATTTTGATATGTCTGATTCCCCTCCATCGAGAACCAgttgtgtatgatgtgtgtgggAATGATTGTAGTCCAATATCTCTAATATCactacatttttaatcattttgggATAAGATGGAGGCTGAAAGTGAGTTCATTAGGATGTTTTATTGGGATCAGAGTTTGTATCCTCTTTGCCCTGGTATCATCTGTGTACGTGGAATATCTAAATATTAAAGAGTTGCTAAAAGATCTTGACCTGGGGACAATGAGCCAGTTCCAGCGTGGTCCGCCGCTTtttacacacagctgtgatCCTGATATAAACTTTATTCACAGGGAGAATGATCTTTCCATGTTTTAAAGGTCCTTGGTGTATAAGTTCGGTTAAATGTACCTAGTTCTTTATGTACTATTTTAATCATCTGAATGATTAGTATTCACAATAAAATTAGCCCAAATGTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82192 lncRNA upstream 50398 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 115759 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 402053 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 526944 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 657399 22392839 ~ 22397101 (+) True G68954
TU82369 lncRNA downstream 180766 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 187622 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 227245 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 263873 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 343675 23447463 ~ 23457206 (+) True G69570
XM_026936345.2 mRNA upstream 16346 22999911 ~ 23038154 (+) True yes1
XM_026936107.2 mRNA upstream 216661 22808862 ~ 22837839 (+) True lpin2
XM_026936106.2 mRNA upstream 216661 22812620 ~ 22837839 (+) False lpin2
XM_026936914.2 mRNA upstream 248566 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA upstream 248566 22776640 ~ 22805934 (+) False myom1a
XM_026937129.2 mRNA downstream 1835 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_026936910.2 mRNA downstream 20392 23124180 ~ 23144086 (+) True cacnb2b
XM_034303413.1 mRNA downstream 78082 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XM_034303415.1 mRNA downstream 82998 23186786 ~ 23201969 (+) False si:ch211-106h4.4
XM_034303414.1 mRNA downstream 96151 23199939 ~ 23214191 (+) False si:ch211-106h4.4
XR_004578015.1 other upstream 1292199 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 214716 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1005007 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1755238 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2604039 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2794347 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile