RNA id: XM_034303651.1


Basic Information

Item Value
RNA id XM_034303651.1
length 4021
RNA type mRNA
GC content 0.59
exon number 19
gene id rc3h1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29704488 ~ 29720768 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcacacacacacacacacacacttgatatGGCGACCAACAGAATAAGCCAGTGTTTTTTATTAGAGAGAAGATGAAGGCGTCCGGACTCATGAAGCATGAGTTTCAGGTCCCGCAGTATGTGATGAGCCACCAGGACGCGTGGTCGTTGTTATTTACGAGCTCCTTCTGATTCCAGTGGAATCTTCTTTTTgtggttgtttttgtttaatgagACGAACACGGTCACGCCTTGGCTCGTACATGTAGACCGTCCGGCGACGATGCCCGTCCAAGCGCCGCAATGGACCGAGTTCCTGTTGTGTCCCATCTGCACGCAGACGTTCGAGGAGACGGTGCGGCGGCCCATCAGCCTCGGCTGCGGCCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAGGCCTGCCCCTTCGACCAGACGGCCATCAACACGGACATCGAGCAGCTGCCCGTCAACTCGGCCCTGCTGCAGCTCGTCGGGGCTCAGGTGCCCAAACCGCAGCCTGTGGCGCTCATTACCTGTCCGGAAGACACCAAGCATTACGATGAGGCGCGGCAGTGTGTGGAGGAGCTCGCCCTCTACCTCAAACCTCTCAGCAGTGcgagaggTGTGGGGTTGAGTAACGCGGCACAGAGCATGCTCAGCAGACCCATGCAGAGGAAACTGGTAACGCTGGTGCACTGCCAGCTGGTGGAGGAAGAGGGCCGGGTACGTGCCATGCGTGCTGCTCGCTCGCTGGGAGAGCGCACCGTCACAGAGCTCATCCTGCAGCACCAAAACCCCCAGCAGCTCTCCTCCAACCTGTGGGCCGCCGTCCGCGCCAGGGGCTGCCAGTTTCTAGGGCCGGCCATGCAGGAGGAGGCCTTGAAGCTGGTGCTGCTGGCTCTGGAGGACGGATCTGCTCTGTCCAGGAAGGTGCTGGTGCTGTTTGTGGTGCAGCGTCTGGAGCCCAGATTCCCGCAGGCCTCCAAAACCAGCATTGGACACGTGGTTCAGCTGCTTTACCGCGCCTCCTGCTTTAAAGTGACCAAGAGAGACGAGGACTCGTCCCTgatgcagctgaaagaggagTTTCGAACGTACGAGGCTCTGCGGAGGGAGCACGACTCTCAGATTGTCCAGATCGCCATGGAGGGAGGTCTGCGCATCGCCCCTGACCAGTGGTCCTCTCTGCTCTACGGGGACCAGTCGCACAAGTCCCACATGCAGTCCATCATCGACAAGTTGCAGACACCTGCGTCGTTTGCGCAGAGTGTGCAGGAGCTGACTATAGCGCTACAGAGGACAGGCGACCCGGCTAACCTGAACCGGCTCAGACCTCATTTAGAGCTGCTGGCGTTCAACATCTCTAACGTTCCCGCTCCAGATGCTCCCCCTCCAACATGGGAGCAGCTGGAGAAGGGCCTGGTAGCTGTGAAGACCGTGGTGCACGGACTGGTGGACTTCATCCAGAACCACAGCAAGAAGGGCACGGAGCAGCAGCAGCCGCCGCAGCACAGCAAGTACAAAACCTACATGTGCCGTGACATGAAGCAGAAAGGAGGCTGCCCCCGCGGTGCCAGCTGCACCTTCGCCCACTcgcaggaggagctggagaaATACCGTAAAATGAACAAGCGCCTGGCTCCGAGACTTCCTTGTGGTCCCTCCCTGCTGCCCGATGAAGGCGTTCCTCTAGAGGGCGTGACCCGTAAACCCTCGCCTCTTACCAACGGCATCGTGGCGCCATGTCCACCACCAGCGCCGCAGCTTTTAGCACGTGGACACGAACCTTCAGCCTATGAGCTCATGCGCAAGCCCAAAATGGACAGCCTGAGCGCTCCTGGATCTCCCCCTGATTCTTTGGATAAGACTGGCCTGCCCCTGCCCCCCCACGCAGTCGCCCACCCGAGGGCCGAGCACCTGCCCGTGCCCAAGCAGATTCCTGGAGTGCCCCGTGGTGCTCCGCCGCTCTACCCACAACAGCAGCCTGAGCTTTTCTATCCGGAGGCCAGAGCGCCATCAGGAGCGCAGTATGATGGCCAGTACTCTGCTGGTACCCCATACCCCTACCAGCCGACTCAGTATGTGCCGCCCCGCTACATCCGTAACCCTCTGCCCTCGGGTGATGCCCCGTACCAGGACCCGTACCCTGCTTATGGCCCTGACCGCCAGTACCCACCTCCCCACCCCACGGCCCCGCCTTTCTCAGGCGTCAGTGCCCACCCTTACCCGCCCCCCTCTCACTATGATGCCCGCCGGCATGGCCCGTACGCAGCGCCGCCCCCGCCGCCACCCCCTCAGCCCTTCGGCCCACCCCGAGACGATCTGGTGCGCATGAGCCCCGTGTCCTTGGATGTGCCGCCCACTCCAGGCGCGCCCACCTCCCTCTACCACCCCGAGGCAGCATCCCGAGAGAGATATCCTCCAGAGGGGTACTACCCCCCTGCACCACATCTAGGCCAAATCAGGTCCCATATCAGGGACCCGTATGGCCGCTCCCAGCCCAGCCTGGACTACCTGCACCGCAGGCGTAAGGAGCTGCTGAACCAGCTAGAGGAGAGAAAAGTCATTTCTCCTCCACCATTCGCTGCCTCCCCGACTCTGCCCTCTCACACCTTCCCCAACGACTACCCTCAGGAGGCACAGTACATAGAGGACGGCGCCAAAGCTTTTGGCACCCGAGAAGCCGACTACGCCGGGCAGTACTCGCCATGGTCATGCGACACCATCGGCTCATACATCGGCTCCAAAGATCCCAAACCGAAAGACGGTGTGGCCGCTGGAGCAGTGGAAATGATGAACATGGAGGGAAAGAGTCTGAGGGAGCCGCCTCTGGACGGACAGCGGCGCTCAGCAGAAGCCAAAGACGATGATCCCATCATTCCGTTCGGCCCTCTACCCACGGTGTCGCCATTTGGCGCCATTTCCCGCACGTCTAAAACGGGCTACCAGACCACGGGCCCTGTGCAGGCCATGGCGTCCTCGCAGGCCTCTGGCTCCAAACCCATCACCATGGCAGCTGACTACTCATACGGAAACCATGGTGGCAGCTGGGGCAGTGCGTCTTACCCTCAGCACCAGAGTATCGCCTCTCCGGGCCACTTCAGCGAGCGGCTGCCTGTGTCCACCCCCGATCGCGAGCAGCTGAAGATGGAGCTCCAGCAAGTCAACCAGCAGATCAGTCAGCAGACGCAGATCCGCAGCATGGAGgccgcGAGTAACTCCATGCTGCTGCAGCGAGAGGCCAGCGCTCTGAACGCTCAGCCTCCAGCTGCTAAATGGCCTGTGGGGGGCGCCGTGTCGAGCGAGCAGCTCAGCCTCGAGCTTCACCACGTCGAGAGGGAAATTGGGAAGAGGACGCGTGAAATTGCTCTGGAGAACCAGGCGGCACAGGAATTCCAATACAAACTAAAGGCCACTGAAAACGGCCAGAGTGACCATAAAGCCCAACTGGAGGAGCTCTCTTTAGGCAGCGTCTCGAACGGCGTAAGCAGCATCGTGCCAGCCAGCAGCGTCGGGGGATCCGTGTTGTCTCTGACCAATAAGACGTCTTCGCTCACCCTTTGCTCCGGAGACCAAGCGGGAAGCGGATCAGAGCTCCAAAAGAACGGTGTCGTTCATTCTTAAGAGCGGCCgtaaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatacacacacacacagctctgtttgAGCTTTTCAGTCAAAAGCGTTAAGATGTGTTAACTGATTTGAAAAGAAATACGCCAATatgagggacacacacacacacacacacacgcgtgcgcgcgcgcacacCTGCATGCTGTTACATGCATGCACAAaacacttgttttattttagaaaaagaaatgagCAGTATCTGCCGTGATTATgaatcttttttcctttttgttctgtgaatgagcttttgtttttgttttaaacgaCTTCTCATCGCCTGGAAACCAGGGCATCTGATTatcctgattatttttttttctcctctgcattttttt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15690 RC3H; RING finger and CCCH-type zinc finger domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86686 lncRNA upstream 23347 29673514 ~ 29681141 (+) False zgc:153115
TU86683 lncRNA upstream 74665 29629593 ~ 29629823 (+) True G73118
TU86653 lncRNA upstream 163053 29541095 ~ 29541435 (+) True G73092
TU86650 lncRNA upstream 177570 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 179652 29524298 ~ 29524836 (+) True G73088
TU86688 lncRNA downstream 1298 29722066 ~ 29723750 (+) True G73123
TU86721 lncRNA downstream 11883 29732651 ~ 29733363 (+) True G73155
TU86735 lncRNA downstream 44352 29765120 ~ 29766106 (+) True G73169
TU86755 lncRNA downstream 71748 29792516 ~ 29794205 (+) True G73185
TU87101 lncRNA downstream 209170 29929938 ~ 29930168 (+) True G73512
XM_026935837.2 mRNA upstream 23313 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 80691 29620111 ~ 29623797 (+) True asip2b
XM_034303440.1 mRNA upstream 101658 29596466 ~ 29602830 (+) True LOC113540482
XM_026935987.2 mRNA downstream 31303 29752071 ~ 29760972 (+) True LOC113539887
XM_026935838.2 mRNA downstream 246903 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 265417 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 277736 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 293887 30014655 ~ 30022571 (+) True blvra
TU86682 other upstream 81451 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 792384 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2083105 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2083811 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2146586 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 1025363 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1025363 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1340962 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1630493 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2049054 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile