RNA id: XM_034303678.1


Basic Information

Item Value
RNA id XM_034303678.1
length 1708
RNA type mRNA
GC content 0.52
exon number 8
gene id tada1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5435223 ~ 5442703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACAGCAGGGGGCGGTGGACTTTTCCAGAGATGTAAAAAGAAGCCTAAATCTCTTAGTGTGGCATGATAACGCTATCACACTCGCAATGCGTGGAGTTATCGTGATCTACTTATCATAACTCATGCAAGATTTCCGGGATATTGGTTTTGTCTGAAGATCCGCGTTATTCAGAAGCCACCCCTTTGTGTAGCTCGATGGTTGGCGCCGATGTCGCTATGGCAGCTCACGCGAGCGAACTGGAGGTGGCGAAGAAGAACTTAACGGACGCCATTGGGGACAATATAAAGCAttaCTGGGCGAATTTGAAGCTGTGGTTCAAGCAGAAGATCAGTAAAGAGGAGTTTGATGTTGAGGCCCGTCGCCTTCTGGGACACGACAATGTTCACATCCACAATGACTTCCTGCTGGCCATTCTTACACGCTGCCAGATTATTGTATCCACACCAGCAGAGGGTCCCGGGTCACTGCAGTGGTCCGGAGGTTCTGCCTCAAAGCCCGCCAAGCCGAAAGGCAAGAAGAAGTTTTCATCCGTGCGCCAGAAATTCGACcATCGCTTCCAGCCCCAGAACCCGCTGAGTGGAGCTCAGACGTTCAGCCCTCGCGAGGCCGgagcggaggaggaggagatgaagCTCAGcgctcacacactcttactgcCCACGCGGGGGCAGCTGGAGGCCCGCATGATGGTGACCGCCTTCGAGATGGGCCTCGACAACGTCACCGAGGACGCCGTGAGCACTGTCGTGTGCGCTctcgagGTGCATTTAAAAGACCTGATCACTGCGGTGGTGTCGCGGAGAAAAGCCTACCGTCTGAGAGAGGGACACTTCCAGTACGCCTTCGGCAGTGACGTCGCACCGCAGCCGTACCTCAAGAACAGCCTGGCTGCGTACCACACTGTCACAGAGTACCCCCCTCCCAGTGCCTCGCTGCCGGCTGCTCCGCCCCCTCAGGTGTCTCCAGACGATGCAGAACAGCAGGCCGCTTTCCTATTGGCCTGCTCTGGCTCCAGTGCCCCCGCCCCCCTGCCTCCCATCAGCACGTACGATCTCCTGGAGGCTCTACAGgtgCACCGCAGGGTGATGCCTTCTCACACCGTGTACGCTCTGAACATGGAGCGCATCCTCGCCCGGCTCTGGCACCCGAGTCACGAGGAGCTAGAGCAGGACAACATCCACAGGCAGCGGCTGGCCGCCAAGGAGGGCCTGTCACTCTGCTGAGGCGCCGCCCGTGTCCTTCAGTTACACCTTCAACTTCCTGTTTCTGCCCAAGGAGGACAACTGGACTGTATACGAGTGTCATTGTGGACAGATTCTCCTTTTAGAataacagtttatttaaatgGTTTATAGAAATTCGAATTGTGAATTTTGAATCTGTGTTGCACATAACAGCATAATTAAACACATCGACTCGGATCAGgagattgattgatttttatagACCATTTAATTAAACGAATTTGATCTCGCTGTCTTAAGTCTTCAGTGCTCAGAATTGTTACTCATGGACCAGTTATGGTTTTACATAGCTAGTGTCCATGCTAACATTCTGGACAATTTATAATATCCGGCTGTATTTTGGTCCTTGTAGTGTGTTTGGcacttttgtaaatatttgtttatgaaGTGATTTTGCTACACATGTACCTTTTCATTGTAAAGGTCTGCAAATACAGGAAATAAAGCCCATCTCATGGTCA

Function

GO: NA

KEGG:

id description
K11317 TADA1, STAF42; transcriptional adapter 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70816 lncRNA downstream 22398 5407481 ~ 5412825 (-) True G59843
TU70812 lncRNA downstream 44155 5389640 ~ 5391068 (-) True G59839
TU70811 lncRNA downstream 45925 5388430 ~ 5389298 (-) True G59838
TU70802 lncRNA downstream 56943 5378053 ~ 5378280 (-) True G59833
TU70790 lncRNA downstream 105322 5322501 ~ 5329901 (-) True G59823
TU70847 lncRNA upstream 49323 5492026 ~ 5492374 (-) True G59869
TU70843 lncRNA upstream 112248 5554951 ~ 5555776 (-) True G59865
TU70973 lncRNA upstream 281822 5724525 ~ 5724761 (-) True G59987
TU70978 lncRNA upstream 283275 5725978 ~ 5726434 (-) True G59992
TU71093 lncRNA upstream 342592 5785295 ~ 5851346 (-) True G60092
XM_034303676.1 mRNA downstream 8454 5410822 ~ 5426769 (-) False fggy
XM_034303602.1 mRNA upstream 39660 5482363 ~ 5494039 (-) True cldn1
XM_026947456.2 mRNA upstream 153587 5596290 ~ 5602267 (-) True igfbp1b
XM_026947457.2 mRNA upstream 153587 5596290 ~ 5602255 (-) False igfbp1b
XM_026947581.2 mRNA upstream 175160 5617863 ~ 5694235 (-) True adcy1b
XM_034304132.1 mRNA upstream 283887 5726590 ~ 5738222 (-) False LOC113547299
trnar-ucg_1 other downstream 625359 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 787343 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1178939 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 1199984 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1515092 3895201 ~ 3920131 (-) False LOC117597092
TU70820 other upstream 35839 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 457546 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 457546 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 738184 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 1001041 6443744 ~ 6443815 (-) True trnae-cuc_12

Expression Profile