RNA id: XM_034303680.1


Basic Information

Item Value
RNA id XM_034303680.1
length 2671
RNA type mRNA
GC content 0.48
exon number 21
gene id acadvl
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13420533 ~ 13436596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCCGGTGGCTGAAGCCCTGCAGTGTCGGTGTATCCTGAGAGGGAAGGACACTCTCTTATCCTCCTTTAATCGTCCTGTAGCTTTGCAGAACAGATTCAGCAGAGCAGGTTTGCTTTCACCGGTTGGTCAGTGTTGTGGTTGATATTAATCCACCAGCTGCAGGCTTCAGGCGCTTTCTTCAAGGAGGACAAAAAGCCGACAGGAGaaattttaacaaacaaacaaacaaaccttttCAAGTTCAAGTTGTCATTTTGCTAACTAGCTAAAAGGCTAATCATGCTGGTACGTAAAGTCACTCAGAATGCGGCGCTGTGTAATGCTGTGCTTCGCCTACCACAGTCCATGTCAGGAACACAACGGCAAGCAGGAGCTGTCGTAGCTGTGCAAAGCCTGCGTCCTTATGTTAGCCAAAGTGCTGAGGCGGTCTTGGAGAAGTCGTCAGCCAGCAGTGGTGTTGCTGCCAAGGCTGAAAGAGTGGACAAGAAGGCTGCCAGTGTGGAGTCAAAATCCTTTGCTGTGAACATGTTTAAAGGGCAGATCAGCACCTCACAGGTGTTCCCCTTTCCCACAGTGCTGAATGAGGAGCAGTCCGAGTTTCTCAGGGAGCTCGTGGGACCTTGTTCAAAGTTTTTTGAAGAAGTAAATGACCCTGCTAAGAATGATCAACTGGAGAAGGTAGAAGATCAGACCTTGGAGGGGCTGAAGGAGATGGGAGCTTTTGGCCTGCAGGTGCCTGCTGATCTGGGCGGCGTGGGCCTCAACAACACACAGTATGCCAGGCTGGTGGAGATTGTGGGCATGCATGACCTGGGCGTGGGCATCACCCTTGGTGCTCACCAGTCCATCGGCTTTAAGGGTATTCTCCTCTTCGGCAATGAGCAACAGAAAGAGAAGTACCTTCCCAAGCTGGCCTCAGgagAAACAATTGCTGCATTCTGTCTGACTGAGCCATCTAGTGGCTCAGATGCTGCCTCTATCAGGTCTGTTGCTGTGCAATCACCCTGTGGAAAGTACTTCACCCTCAATGGAAGCAAAATttggatcagTAATGGAGGCCTGGCTGAGATCTTTACTGTGTTTGCTAAGACTCCAGTGAAAGATGAGAAAACTGGAGAAGTGAAGGACAAGATCACTGCTTTCATTGTTGAAAAAAGCTTCGGAGGAGTTACACATGGCCCTCCAGAGAAGAAGATGGGCATCAAGGCCTCAAACACAGCAGAGGTGTACTTTGAGAACGTTCGTATACCAGCCGAGTGCGTACTGGGTGAAATCGGAGGAGGATTTAAGGTGGCCATGAATATCCTTAACAACGGGCGCTTTGGCATGGCTGCAGCACTCTCAGGAACCATGAAGGGTGTTCTCGCTAAAGCGGTGGACCATGCTGCGAACAGGACACAGTTCGGTAACAAAATCCACAACTACGGAGTCATACAGGAGAAAATGGCCAGAATGGCCATGATGCAGTATGTTACAGAGTCTATGGCCTACATGGTCAGTGGGAACATGGACAGTGGAGCAACAGATTTCCAGATCGAGGCTGCCATCAGTAAAATCTTTGCCtctGAAGCAGCATGGACTGTGACTGATGAGTGTATTCAGATTATGGGTGGAATGGGTTTCATGAAGGACGCTGGTGTCGAGAGGGTCCTGCGAGACCTGCGAATCTTCCGTATCTTTGAGGGCACCAACGACATTCTGCGACTCTTCGTGGCGCTCAACGGCTTCCAGAATGCAGGAAATCAGCTGAAGAACttacaaaaagctctgaaaagTCCATTCAGCAATGCTGGCTTGTTGGCTGGGGAGATCACCAAACGTGCCAAAAGGAAGGCTGGCATGGGTACAGGCCTCACGCTGCAGGGAAGTGTCCATCCAGAACTGGCTCACAGTGGCGCTCTGGCGGTTAAAGCTATTGAGCAGTTTGGAGAGGTGATTGAAGAACTGCTTCTAAAGCATGGCAAAAGGATCATTGATGAGCAGTTTGTGCTGAAAAGAGTTGCAGACTGTGCTATTGACTTATATGCTATGGTTGTGGTGCTGTCCCGGGCCTCCAGGTCTTTGAGTCAGGGTCACTCTTCTGCTCAGCATGAGAAGATGCTTTGTGAAACCTGGTGTACTGAGGCTCATGAGAGAATCATGCAGGACATCAAGTTCCTGAGGTCAGGCACATCCAAGCAGATCTTCAAGAACCTGCGGGCCATTTCTGCAGCTGTGGTAGAGAATGGAGGGGTGGTTTCTCCTCATCCCTTGGgcttttaaaaatcactttcctctttctcttagTGCCATCAGTCAGTCATAATCTAACTGTCTCTTAGACATTGATAAGCATTCATATTTCATGTGACTTTCCACATGGCTCAGTGCTTCAAAGCTGGGCGAGTGGAGGGAATTGTTATACCCCTATAAGACTTGCTAGTACCAGTCTGTAAAATTAATGTCAAATAAACTGAATCTGCAAAGATTTCAGCACAGGAAATGTTTCGAAAGTGTTTTGGGGTCTGTAACTGGTTGGTATAGTATGTGAGAGATTCACTGATTGAAAATATAgtactaggtttttttttttttttgtttgttttttttaaaccacatacTTGGACCCACATCTGGCCTCTTTCTAGTGTTGTTAATTTGTCATTGTATTGAAGGGATTTTAACTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K09479 ACADVL; very long chain acyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75685 lncRNA upstream 3092 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 32579 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 134699 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 142829 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 153499 13259391 ~ 13267034 (+) False LOC117597082
TU75682 lncRNA downstream 22766 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 67864 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 133406 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 259053 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 259053 13695649 ~ 13748072 (+) True G63973
XM_026937145.2 mRNA upstream 3672 13399435 ~ 13416861 (+) True dvl2
XM_026935898.2 mRNA upstream 26361 13391809 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303510.1 mRNA upstream 26361 13391810 ~ 13394172 (+) True si:ch73-335l21.2
XM_026935896.2 mRNA upstream 26361 13391811 ~ 13394172 (+) False si:ch73-335l21.2
XM_026935963.2 mRNA upstream 45483 13328034 ~ 13375050 (+) False si:ch73-335l21.1
XM_026937015.2 mRNA downstream 7198 13443794 ~ 13450823 (+) True LOC113540489
XM_034303789.1 mRNA downstream 31956 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA downstream 31971 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA downstream 33223 13469819 ~ 13475037 (+) False LOC113539889
XM_026936951.2 mRNA downstream 49940 13486536 ~ 13500833 (+) True si:dkey-33c9.6
TU75687 other upstream 1837 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1125410 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1723238 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2757126 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2854809 10565653 ~ 10565724 (+) True trnak-cuu_21
TU75730 other downstream 34173 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 122027 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 268980 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 819148 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1195434 14632030 ~ 14658936 (+) False zgc:194930

Expression Profile