RNA id: XM_034303749.1


Basic Information

Item Value
RNA id XM_034303749.1
length 4922
RNA type mRNA
GC content 0.47
exon number 18
gene id mark2b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16675435 ~ 16715097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gTAGCGCCTGTACTCGGATCTGGGCGGACTGTGGAGGAATCTTTGAGTTTTTTGGGGATCTGCCCGTCTGAAGGCTGGAAGGCTGGATGGCTAGCTAACAGTTGCTAGTGCTCGTCTGTATTAGGTTAGCTGCTTCAGTTCCGCGGTACACCCCTGTAGTTAGTGTCTTACATTAGGGTTAGTCAGCTGCAGACGTGTTGACGTTGATTTTCTCGACCGGTATCGGTTTCGTTTAAGGTCGCGCTGATTTGTTTGcttgtcattgtgtgtgttttttttccgcAGCGATTGTCAAGTTAAGGtgagctagctggctagctaacattacctgCTCCCAGTCTGGCCTGACATACTTGATTTTAATCGTCCATGTACCAGGAAAAGATTCATAAAAACTTTACAcatctctttttatctctcctTTTTCAAGAATGGGTGCTATAATGGCTTTGACATGTTGATATGTTTCAGACATATTGAAGTTACCCAGGCAGCGTTCAGGCAGATTTCACTCGGTCTTCTACGTTAAATCGAATTAATTAGCTTAGTAAAGTTCACGATAACTAAACCAGCGTTGTACTGAACTGTTTGACAGCATTTTAGAAATAGCTACCAACAGTTTAAAGAGTGGTATTTTTAATAACCTGCTACACTGTTGACATGGACACGTAACTGATGTGGGACTGGACTTGTTGATCTGTGTGTGCGTGGCTAGCTAGCGTTAGCTGCCTCTTTCACATCCCTGCTGGGGGAAGCCCAGaaaatctctcacacacgctTATTAAATGCGTGATTAACTCCTCTTTACGCTCGGCCACATCTCTGACAACTCCTCACAAATGTCCACCCGGAATCAAGGATTAGGAGTCATCGAACATTCTTCTGGACAGACCCCCATAGACGCCAAAACAGGAGGACGTTCAAGCATGTCACGAAGCCGCAACACGACCACCATGACAACGGATGAGCATCCACACATCGGAAACTACCGTCTGCTCAAAACCATCGGCAAGGGCAACTTTGCGAAAGTTAAATTGGCCAAACATGTCCTCACAGGAAAAGAGGTGGCAGTGAAAATCATAGACAAGACACAGCTCAATTCTTCCAGTCTTCAAAAACTCTTCCGAGAAGTGCGAATCATGAAGCTTTTAAACCATCCAAATATAGTGAAGTTATTTGAGGTGATTGAGACAGAGAAGACACTGTATTTGGTTATGGAGTATGCCAGTGGAGGTGAGGTTTTCGATTACCTTGTCGCTCATGGAAGGATGAAAGAAAAGGAGGCTCGTGCCAAATTTAgacagATTGTTTCTGCTGTGCAGTATTGCCACCAGAAGTGCATTGTACACAGGGACCTAAAGGCTGAAAACCTTTTGCTAGATGCAGATATGAACATTAAGATAGCAGACTTTGGTTTCAGCAACGAGTTTACTGTGGGAAATAAGCTGGACACATTCTGCGGCAGCCCCCCCTACGCCGCTCCTGAGCTCTTTCAAGGCAAGAAGTACGACGGCCCCGAGGTTGATGTCTGGAGCTTGGGGGTCATTCTCTACACACTGGTCAGCGGTTCCCTGCCCTTTGACGGACAGAACCTGAAAGAGCTTAGAGAGCGTGTATTGAGGGGGAAGTACAGGATTCCCTTCTATATGTCTACAGACTGTGAGAATCTACTGAAGAAATTCCTTATTCTCAACCCAACCAAAAGAGGCAGTCTAGagCAGATCATGAAGGACCGCTGGATGAATGTGGGTCATGAGGAGGAGGAATTAAAGCCCTACATAGAGCCCCAGCCTGACTATAAGGACCCCAAAAGAACAGATATAATGCTACAAATGGGCTACACACAAGAGGAAATTCAGGATTCACTTGTCAACCAGAAATATGATGAAGTTATGGCAACTTACCTGCTGCTTGACTATAGGAACTCTGAGCTCGATGAGAGTGTCAACATGTTGATCAAACCACGACCAGGAAGTGACCTCACAAACAGTAATGCACCTTCTCCACCTCACAAGGTACAACGCAGTGTGTCATCTACTCAGAAACCACGAAGGCCCACAGATCAGGTCACATACTCTAAAAGGCCTCAAGGGGATAACAAGTACACAGCTGAGGATTCTGGGCGGAAAGGGTCCAGTAGCTCAACCAAAGTGCCACCCAGCCCCGTCGTCCCAGGAGACAGCAAAAAGAGCTCCACACCCTccactAACAGTATCCTGTCCACTGGCACAAGCCGCAGCAGAAACTCTCCTCTCACTGAGAGATCCTTGCTGGGAGTCCAAAACGGCAAGGACAGCCTGAACACACCCGGGTCCCGCGCCTCCACGGCCTCGGCCGGCGCCGTACTCACATCGTCCTCGTCCTCACGTTCCCGTCATCACAAGTCCATGTCCTCCTCAGCCCACCCTTGCCCCGCTGACCTACACGCACACCAGCCCAGtgGTCCTCCCCAGAGAGCACCTGGTGCATCACCGTCAGCTTACAACATCAGCAGCGCTACAGGGCCGGAGCGTACCAACTTTCCGCGAGGGGTGCCCGCTCGGAACACCTTCCACATCGGTCAGCAGAGAGGGGCACGGGATCAGCAAGGCTCACCATATCACGCTCCTCCAGCCTCGCCTTCCCTGTCTCATGGCACCAGCCAGCAGCGGAGACCCCCAACCTCAGGCATCTTCAGCAAGTTCACCTCCAAGTTTGTGCGCAGGAGCCCATATGAGGGAGAGAGTCGAGACGAGGGCAGCAGATCCATGCTGAGCAGCGCCGACAAGGCAGAGAAGACTGGAGTAGGAGGTGGGACGCTTGGCTCAGGTGGTGGGGATGAAAACAAGGACtcactctcctcctcctctccaaGGGGTGGAACTCCGCCCCCGTCTGCGAAGGACAACACCAAACCTCGCTCGCTGCGCTTCACCTGGAGCATGAAGACCACTTCATCCATGGAGCCCAGCGAGATGATGAAGGAGATCCGTAAGGTTCTAGACGCTAACAGCTGTGAATACGAAGTGCGTGAGCGCTACATGCTCTTCTGCATGGCTGGCAACCCCTCCCGGGATGACTTCGTCCAGTGGGAGATGGAGGTGTGCAAGCTACCCCGCCTGTCCCTCAACGGCGTGCGCTTCAAGAGGATTTCCGGCACTTCCATCGCCTTCAAGAACATCGCTTCCAAAATTGCCAATGAGCTCAAACTATGAGGGGGGAGAGCGAGGGTTAAAGGGGGGCGGGTGATGGTTAGAGATGGTGATGTAGGGGAAAACGGGAAGGCAGGCAGTAACCACTGAAATGAGTTGTGAGATACTAAATGGACAGATATTACGGTTTTGTTGAAATAAGCTGTACAGATACTACATGCTGAAATACAGTGTGAGgtatgagagaaaaaagtgctGTATATGTTGATTTTGCTGGTTTCAGGATCACTAGCCTTTACTCTCATTTATCAGTCCAGAAAGGGggtgaaaggaaagaaacacaGTTGTTTTACTTTTGTCCACTATGAGAAGATCCTGATTTGATAAACTCTCCTGAGTTATGTGAACTCGTTTTGGTCTTCAACTCATCACTCACGCACTGGGCATCCGGACAGAGTTTGTTATCTGCacatgttttcatttgttttgctgtGTGGACTGGGGTCAGAGTTTGCCCACAAACCCACTCTCACCCAACACTTCTTCCTTTTTGTTCTGTCAGCGGGGTTAAACCTCATCAGCACCTGAAAAGAGGGCCATCACTTGAATACCACTCAAGGGATCGTTATGCTTTGGGTGATTTAGTTCTTCATTGACTGGGTTGTGTTTTGTTGCACTGGAATGGgtgtatttttgttgtcttttttcccccctttctgAAGAGAAATCAAATGTATTTCAGTGTTGTAAAATCAGTGATTTATGCATTGTTATCCttaggatatttttttttccttcttgtgGTTTTAAAACCCCTTTATGTCTTGCTGTAATGAATGCCACACAAACAATAGACTCCAACAAACCTCCTGTTCCCCTTGGACTAAACAATCACTGGAAAAGACACTGCAAAAGAGGACTACATCACCTGTATCAGCACAGCTGTCATTACGAGACTGATATCTAAATGCCTGTTTGGGTTTCATCTGTTAGCCCACCTTCCAAATCCAGGACGCCTTCGCCTGAAAGCTGCAGTGGTTTGGTAGCAAATGAAATGAGTCCCGCCATCACTTTGAGCATTACCCTTTTCATGCTTGTCCCCTTCTGTCATGTGCATTAGTCTGAATGAGAGTGAATCATCTGTGTATAACCAAAAGGTTGCTTTGGGCTTTTTGTCTTGACCTTCATGCAGTGATTGTATTAAGTAGCAGCAAGCCCACAGAGAACTACACATCAGGAGCAGATGGTCTGACTACCACTTAGTTTAAATGGGTTATCATCATTTTGATCAGTTTTGATATTCTTGCTCAGGCATTAGTAGAGCCAGCTGAGAAaggtagatgtgtgtgtgagaaaggtgAGCTATGCCTCGTCTTTCCACTGAGCTATACATGTTTTGCATGCATGGATACACACTCGGTTATTATTGAAACAGTAGGGGGAGCAATGGAGTCTCTTCCAAGTCTGTAAGTGGTTTGTGGGACACTTGTGCTCCTCtgtgttttatatctttttttcagaaaatgatgtttttaatgtcaCGTTATTTGCAGTTCTATGAATGATCATTGTCTAAGGTGCTGGGGATCCAATTGTCATTGTTAtctattaatataatttttcttcagggttgatttttatttcatatcatttttcattgctgtaattttaatatttttctttgtcagTGCTGATGTATGTCAGGGATAGAAAGAACTCCAAATGTACATTTGGTGCAAAGAGAGATGATTATGATCAATGatagtaataaatgaatgatgaaacTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77679 lncRNA upstream 80979 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 97699 16569687 ~ 16577737 (+) True G65580
TU77609 lncRNA upstream 160595 16514637 ~ 16514841 (+) True G65542
TU77544 lncRNA upstream 232536 16431945 ~ 16442900 (+) True G65495
TU77422 lncRNA upstream 244750 16430461 ~ 16430686 (+) True G65395
TU77740 lncRNA downstream 8798 16723895 ~ 16729352 (+) True G65644
TU77752 lncRNA downstream 36763 16751860 ~ 16752090 (+) True G65654
XR_003403984.2 lncRNA downstream 43130 16758227 ~ 16762011 (+) False LOC113539905
TU77754 lncRNA downstream 43163 16758260 ~ 16763461 (+) False LOC113539905
TU77755 lncRNA downstream 43163 16758260 ~ 16763461 (+) False LOC113539905
XM_026936430.2 mRNA upstream 1209 16669457 ~ 16674227 (+) True krcp
XM_026935980.2 mRNA upstream 19552 16653821 ~ 16655884 (+) False cskmt
XM_026935981.2 mRNA upstream 19552 16653871 ~ 16655884 (+) True cskmt
XM_026936348.2 mRNA upstream 27307 16620744 ~ 16648129 (+) False shroom4
XM_026937064.2 mRNA downstream 20970 16736067 ~ 16743253 (+) False naa40
XM_034303619.1 mRNA downstream 20973 16736070 ~ 16743251 (+) False naa40
XM_026937065.2 mRNA downstream 20981 16736078 ~ 16745357 (+) True naa40
XM_026935935.2 mRNA downstream 31601 16746698 ~ 16750124 (+) True b3gat3
XM_026936987.2 mRNA downstream 37040 16752137 ~ 16755407 (+) False sb:cb1058
XR_003404046.2 other upstream 304752 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 356270 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 635452 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 2016500 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2406096 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 45422 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 45652 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 45884 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 46169 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 46475 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile