RNA id: XM_034303822.1


Basic Information

Item Value
RNA id XM_034303822.1
length 8376
RNA type mRNA
GC content 0.44
exon number 19
gene id epha4b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30593706 ~ 30701045 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagcagcaacagcagcaactcGGACAGAAAGCGACCCAGAgagtgtgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgcctgtgcgtgcgtgtgagtgcgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtatatgtctgtgagtgtgtgtgtgtgagagagagagagagagagagagagagagaggaagggaaatCAGGGATGCAGCGCGCTCCCTGAAGCGCGCAGCCTGAACATGGCACTTTCTCGGATTTATCCAGTCCTCATTTTCctgctgcttttcttttcctgcTTGGGACCGGGCCGAGGCGCGCGGAACTACCCTGATAATGAAgTTACGTTACTGGACTCGATGTCGGCTCTGGGGGACCTTGGATGGGAGGCGTATCCAGCAGAAGGGTGGGAGGAGATCAGCGTGATGGACGAGCGCAACACGCCCATGCGCTCGTACCAAGTGTGCAACGTGATGGAGGCCAACCAGAACAACTGGCTCCGCACTCGCCACATCGCCCGCCATGGCGCTCAGCGCATCTACATCGAGATCAAGTTCACGCTGCGTGACTGCAACAGCCTTCCCGGAGTCCCTGGGACTTGCAAAGAGACGTTCAACATGTACTACCACGAGTCCAACAACGACAACCTGTGGTTCATCAAGGAGAGCCAGTACGTCAAGATCGACACAATCGCTGCAGATGAGAGCTTCACGCAGACCGACGTTGGCGACCGCGTCATGAAACTGAACACAGAGGTTCGGGATATCAGCAACCTGAGCAAAAAGGGCTTCTACTTGGCCTTTCAGGATGTTGGTGCATGCATCGCTCTTGTCTCACTGCGGGTTTTCTATAAGAAGTGTCCGGCCGCCGTGCACAACCTGGCGCATTTCCCCGATACCGTGACAGGGGGAGATTCGGCACTTGTTGAGGTACATGGATCGTGCGTTAACGACTCCGAGGAGTTTGAGTCACCGAAGATGTACTGCAGCGCCGATGGTGGGTGGCTGGTACCGATCGGGCGCTGTATCTGCAAGCCAGGCTTCGAGGAGGGCAAGGACTACTGCCAGCcttgcagaccaggtacataCAAGGCCTCGGCCAAAGACGCCTACTGCACCAAGTGTCCTCCACACAGCTACTCGCAGCAGGAGAAGGCGTCCGAGTGCACATGTGAGAAGGGCTACTACCGCGCTGACATGGACCCTAGATCTATGGCCTGCACTAGGCCTCCATCAGCTCCAGAAAATGGCATCTCCACACTGAATGACACATCTGTTGCACTGGAGTGGCGTCCTCCGCGAGACAGCGGCGGCCGCAGTGACCTCGCCTACAACGTGCACTGCAGGAAGTGCGCACCAGACGGCAGGAAGTGCGGCCCATGTGGAGGCGGAGTCCACTTCACGCCACGGCAGTTCGGCCTCGATGCAACGAAAGTGCTCGTGTCTGGCCTGCATCCTAACACCGACTATACGTTTAGTATCGAGGCGATCAACGGCGTCTCCGATCTGAGTCCGAGTCCAAAACAGCAGCTCACCGTTAATATCACCACCGGCCAGACAGTGAGTGTTATtctgaaagaaaggaagagtaAAGACAGCATCACTCTGGCGTGGCAGGGACCGGACAGACCCAACGGAGTCATCGTCGAATATGAAGTCATCTATTACGAGAAGAACCAGCGAGATCAGAACTACACGGTGCTGAAGACGAAATCTAACATGATGACGGTCGAAGGCTTGAAACCTGGCACCACGTACGTATTCAGGGTTCGAGCTCGAACTGACGGAGGCTACGGCAGCTACAGCGGAGAGATCGAGCTGGAGACGAGCCAGGAAGATATGCTGGCGATTGGAGATCCGAACCAGTCCACCATCTTGGCGGTGTCGATAGCAGGAGGCGTGGTGCTGCTCGTCTTCCTCGTCGCCTGCTTCGTAGTGAGCGGAAGACACTGCGGCTATATCAAGGCGAAACAAGATCCCGACGAGGAGAAGATGCAATTTCAGCATGGCAGAGTCAAATTGCCAGGAAGTAGGACGTACGTCCATCCACATACCTACGAGGACCCAAATCAAGCCATTCGCGATTTTGCTAAGGAAATTGACGCCTCCAGCATCCGCATAGAGAGGGTCATTGGTGCCGGGGAATTTGGTGAGGTGTGTAGCGGCCGTCTGAAGCTGCCAAGCAAGCGAGAGATCTATGTAGCCATCAAGAGTCTGAAAGCTGGTTACACAGAGAAGCAGAGGCGTGATTTCCTGAGCGAGGCGAGCATCATGGGCCAGTTCGATCACCCAAACATCATCCGGCTGGAGGGGGTTGTCACCAAATGCAAGCCGGTGATGATAATAACCGAGTTCATGGAGAACGGATCCTTGGATACTTTCTTAAAGaaacATGATGGTCAGTTCACCATTATCCAGCTGGTAGGAATGCTGCGCGGAATCGCATCCGGGATGAAGTATTTATCGGACATGAACTACGTCCACCGTGACCTGGCTGCTCGGAACATCCTGGTCAACAGCAACCTGGTGTGTAAAGTGTCGGATTTCGGCTTGTCCCGAGTGTTAGAAGATGACCCCGAAGCTGCTTATACGACACGGGGTGGAAAAATCCCCATTCGATGGACAGCACCGGAGGCCATCGCGTACAGGAAGTTCACCTCAGCGAGCGACGTGTGGAGCTACGGTATCGTCATGTGGGAGGTGATGTCGTATGGCGAGCGGCCATATTGGGAAATGTCCAATCAAGATgtaatAAAAGCGATCGAAGAGGGATACCGCCTCCCCCCGCCAATGGACTGTCCAGTGTCTCTTCACCAGCTGATGCTGGACTGCTGGCAGAAAGAGCGAGCTGAGAGACCCAAGTTCAGCCAGATTGTCAACATGCTAGACAAGCTGATCCGAAATCCCAACGCCCTGAAAGAGCTGGCCAACAGTTCCATCTGGGAAGACCCGATCACCCCAGAGTTCAGCGTCAATAGTGTGGATGAGTGGCTGGATGCCATAAAGATGGGCCAGTACAAGGACAACTTCACCTCTGCTGGCTACGTCACATTAGATTCAATAATCTACATCAGTGTAAGTGAGTTGAGTAAGATGGGTGTGACCCTCGTTGGGCACCAGAAGAAGATCCTCGCTAGTGTCCAGAGTCTGCACGCCCAAGGAAGCCATGTGCAAGTATAACAGCTCTGGACAAACTGAAAGACAGatagaagaggaaaaagagagacagtgtggaAGTGTGGAACCCAGAACAGTGCTTCACCATGCCAACCCCCAATCCCGGACGTTTGGCTGCAGCCCAAGAGCTCACAATTTGTGCAGCGGAACCAGAGACTGATTAGCAGTGGAAAATTCAGACCAGACGGATGATGGTCAAACACAAACTCTGATGATTTATGAACATTattgtgagatgtgtacagtcaTTCGCATTGTCGTTTCCTGtcatttgcttcatttttcGAGGTTTGATTTAGATGAATAAAAAGGTGCCTGGGTAGATTTGGACCTAAGGGTGGTGTGTTTGGAGCCACAGTATGGGCCTTGTAGTGTTGTGCTCTGAACATGATAGCAGACAGGAAGTGTGATTTGCAGCCCTGGCTCACAAGATGATGTTTATCTAGACTGGCCATTTTTAACGGTCTTCAGTAATAATTATATGAGGTACTCTTTCTGGTCGGATTCCCTCACTCTCGGCAATATGAGATTATGTTTCACCAGCGGAAGTAGGGCTAGCAGCGTTctggaaatgtaatgtaatccCGGTCTTTGCGGTATTTGCGATTACAGCATTATGGTATGAGGAAACATTGCAATGAGTAGCTAATTTATGGCTAAGATAAGATTTGTCCCATACTGTAATATCCAGTAGAGAATGTCAGgggtttgtctttttttttcagtcagtaCAGTATTAGTCATACTGTGGGCTGGTGTTTGATAGTTAATGCTAGTAATGGTTATGAAAATTAAGGATGGGTTTCCTTCAATGCACCAGTattgtcttttaaaaaatgagtgagaatgtctctgtgtgtggaCCTATAAACTGACTTATTTTGGGTTGGTTTTCATTTCATGACTGCAGAAAAGCGGAACATGCCGTTTGTGTATGTAGAGCACCACGGTACACATGCTATACACGGTGTCTTTGAGAACTTTAAAGGAATTCTCTATgtaaaaacatcaaaataaagGACAGCAGGTATTATATAACAATGCCAGCTGTCATATAATTGATGACAGCAGTGGCTTTTTTTTGAACCaagtattcctttaaagttttaaagcAAATTAGCCTACACCATTAGCTTCGTAGCTAAGATGAGAGCATTGAATCCCAATTAATATAGTAATTAACAAAATCCTGAGTATGGCAAGATGTAACACATAGCGCAACAATGCATGGGAGCGTGATTTGTGTTTAGCGTTATGAGGAACACAATATATATGCAGACTCTTCCCAGGTAGCAAACTGATGCTTGGGTGGCTAGATTGGCTCTCCTTGTACAACGTTTTGTCAATGTTAGGCCAACATTGGCAAGGTGGATTTAAACGTGGATGAATGTGGCCCAATGCTAGCCCAAAGGACAAAATTATATTGGGCAACTGTTGGGAAGTTGGACTTAAAGGCGGCCAAAAATTGGTCCTGGTGGCCCAATTTTAGCCCAATGGACAAAATTATATTAAGCCAGTGTTGGCAAGCTGGATGTAATGGGTGTAAAGGTGGCTAAAAGTCTGTCGACCCGGGTCGCCCAATGCTAGCCCAGTGTATTTTGCAACCCAACTCTGGGCAATGGCTGGCATGGCTGGCAAAGTCAATTTGCTACCTTGGTGATCTCTGAGCATTAACATCGGCCACCATGTCCTTCACCGTATGTttgtttacagcagaacaagaaACGCAACTTACACTCTTGTAAAATAGTGTATAAAGGTGTACAGCGTCGAATTCAAACGAGTGAACAAAAAGCTGTAGAATGTTTGTAAtgtactttatttcattttctgaagaagaaaaagaagatgtGGGACGTATCGATTGGTGGAGCTCGCCGACATGGGATATAACAGAACTCTGGAATGTAGCATGGATGCTAAAGCTTCATCTTTTATAAGCAAGTGACAGTGACTGCGGTTCTTTTTTCACTCCAGTGGTGGCTGTAGCTGCTTGACGTTAGATGCCTTACTAACTgtgctgtttctttctcttcttcctggTAGAGGCAGTATCATGATGAGATATAGTGTACATAGTATTTATCAGAACAACGCCACTGAAAGCTATAGTGAATGTCGGCGCAACACGTCCGGCTTTGTGTTAATTCACCTTTCAGAGGTTGAACCTTCTTTCATTCACAGTATTCAAGCTTGTGTTGGTGCATGTAACTTTGGGGAAAGAGTGATCACAAACCTATTCATGCTGATTTTGCTGCATTTACAACACTACTATTTTTGTACTAGTTCTGTAAAGTATCCATTTCATTTACGCAACAAAAGTCAAATGTAGGTTCCTAGTAGATTCTTAAGAATAGCTTACTAGCAAACTCCTTGTCTTTTAAACCATATGTTTTCTCTTTAGTACTATGGAGCCTAAATGAAGACATCCctacttattaaaaataattcttgcCCACAACTTATTAACATGTGGGAACGATGAGCGGGGTTGGAAGATGAGTGAGGTTATTAAGTTGTGGGGACAAGGTCATTAAGTCATGGTCATGACTTAGTAATGCGAGGGAACGAGATAATTAAAGTCATTGGTATGACTTAGTAATGCAAGTGAACAACATAAGTCATGGCCACAACTTAGTAACTTGAGGGAATGAGATAATTGAGTTATGGCCATGACTTTGTAATATGAGGGAATGGGATAATTAAGTTGTGGCCATAACTTATTAATGCAAGGGAACAAGGTAATTAAGTTGTGGCCATGATGTAGTAACTCAAGAGAAGAAGATAATTAAGTTATGGCCATGACTTAGTAATGCGAGGGAACGAGATAATTAAGTTGCGGTCATGACTTATTAATGCGAGGGAACAAGATAATTAAGTTGTACTCATGATGTGGTAACAGAagggaatgagataattaagtaGTGAACATGATTTAATAATGCAaaggaatgagataattaagtcatGGACACGATTTACAAGCAAgagaatgagataattaagttgTGAACACAATTTAGTAACACAAGAACATGAGATAATTAGGTAGTGAACAGGATTTAGTAACACGAGGGAACGAGATAATGGTTGTGAACACGATTTAGTAACACAAGAACATGAGATAATTAAGTTGTGAACACGATTTAGTAACAAGAGAACGAGATAATTAAGTAGTGAACATGGTTTAATAACATGAGGGAAAGAGATACTAAATCGTATTCACAACTTAATTAACACAAGAACATGAGACAATTAAGTTGTGAACATGATTTAGTAACAAGAGAACGAGATAATTAGGTAGTGAACAGTATTTAGTAACACGAGGGAACGAGATAATTACGCCAAGGCCAcgatttagaaataaataaatgagataaataagTCATAATCACAATTTAGTAATTGGAGGGAATGAGATAATGAAGTAATTGCGACGGTTAGAGAATGGTCATGGTCACCACCAGGCgcttggggaaaaaagctgAAGATTACGCAAGGAGAAATGACGTCTTCAGTAAAGATCTAGCTTCAAATTTGAGTTTCAATCTGATTTCAGCACAATCTTGCCTAATTAATTTGTGGCCACatttaattatctcattcccaCAATTTAATGATCTCGTTCCCTCGAGTTAGCAAGTCATGgccatgcattattttttttattaagtaggAATGTCACCAGTGAGGCTCCTTGTAGTACAGAAATTACCCCAGTGACATTTTCCATTTCTTGCTAATGGTGTAGTTATTCCTTATTTGGTGtactgtaattaaatataaaaccataaTTGCCCATACATAATTTAGGACAAAGCATAATCTGTAACACACTGTGCAATTTCTTTGAAACAATTCCATGTTTGATCTGAGTCTAAATGCTCATTAttaaatctgattattaaaaggtcTGTACATTTTACAGGAgaattttacataaaacaatAGAGTTCATGAAAGCTCCTGAGGGAAAACGAGTTTAAATTGCTAATGTCTCctatgttattatttatttgaggtacaatgacaattttttaattattattgttttgctttttgactttttttcacatattaacACTAAGTGTAAGCAAATTAATCATTCGTTCCAGCTCAAGCACTCTTAATGACACTTATTTACTGACTGCAAACgaaagagaaagacacaaaCTGCAATATTCATTTGAAAAGCtgattctgtttttcatttttatgttcttAAGTCTACTAgaggagacagacagtgtgGTGATTAAGATTAAGTGAACATGGGATATATTTTGGGAGGCATCAcgagaccaaaaaaaaaaaaaaaagaagtgaccATGTGATTTATTGATCCAAATTTAAGAATATAGTCACAATCGATAGGGCGAGTGTCCAAAGATGGACTGAacctacgttcacactagcaccATTCATACGTGTGAGACACAGGGCCGTGATTTCTGAGAAAAAGTGACAGCGTGAaaacatttgaattgagattttctcaattctatccAAATTAGGATCCAAAAAATTCAATGGAATGATACTTTGGACCAATCCTCTAGCCTGaggtttcttcagttccccacttaCAACCTGCTCTTAAATCTACGAAAAACTCATACCTGTGGTTTTCTCCTATCCCGTCATATACAGTCTCTCGATTAAACCTTTACCgaaacattacaaagaaaaattaaactCAGAAGCAAGTGGCGGAGATCGTTGACGCCTCTGATGATTggatgtagctagtacagttttctcgctttgctaatctgttAATAAGGCTAGTACGAAGCCAAGCACGTAACATGCAAgtcaaccaattttcacaccaATTAGTAGCTAACTGTTAACAATTAACCAGTTAGCTGTAGACTGTACATTTTGGCTACTACCGTTAAATAAAAaagctggacaggccacgcccactatCGACAACCGTAGCGGTCGCTACACATATGCCAGAGACAAACCATGGGGTAGTTTTTCCAATCCTGTTCCCATGAGCGGATGTGTTTTCAGCAGCCCTGAAAATATCAGCAGTGGTTTTTGTTGCTAAAATATTTGTACATGATTTAGCTCGAAACATTTTCATGGGGTGGCAGCCAtgactttttcaaaaaaatgtaaattttattttgattatatttagTAAGTTGTTTGTGTCCAaatatgtgaagtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87486 lncRNA downstream 115472 30477403 ~ 30478234 (-) False G73834
TU87487 lncRNA downstream 115472 30477403 ~ 30478234 (-) False G73834
TU87488 lncRNA downstream 115472 30477403 ~ 30478234 (-) False G73834
TU87489 lncRNA downstream 115472 30477403 ~ 30478234 (-) True G73834
TU87490 lncRNA downstream 115472 30477403 ~ 30478234 (-) False G73834
TU87654 lncRNA upstream 69052 30770097 ~ 30771174 (-) True G73977
TU87650 lncRNA upstream 76714 30777759 ~ 30845482 (-) True G73974
XR_003404008.2 lncRNA upstream 135307 30836352 ~ 30838110 (-) True LOC113540224
TU87738 lncRNA upstream 329344 31030389 ~ 31031380 (-) True G74047
TU87756 lncRNA upstream 355440 31056485 ~ 31116436 (-) True G74060
XM_026936328.2 mRNA downstream 370386 30212389 ~ 30223320 (-) False acvr1l
XM_026936331.2 mRNA downstream 370386 30215663 ~ 30223320 (-) False acvr1l
XM_026936330.2 mRNA downstream 370543 30212389 ~ 30223163 (-) True acvr1l
XM_034303540.1 mRNA downstream 370947 30212389 ~ 30222759 (-) False acvr1l
XM_034303327.1 mRNA downstream 508845 30064050 ~ 30084861 (-) True crlf1a
XM_026937067.2 mRNA upstream 19987 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA upstream 19987 30721032 ~ 30724657 (-) True LOC113540512
XM_034303856.1 mRNA upstream 40482 30741527 ~ 30750968 (-) True LOC113540055
XM_026937106.2 mRNA upstream 72404 30773449 ~ 30775702 (-) False ccl20l
XM_026936925.2 mRNA upstream 546015 31247060 ~ 31277249 (-) True rem2
TU87233 other downstream 571181 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 862849 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1017979 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 1068645 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 1069019 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 40624 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 72418 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1166037 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1169473 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1170114 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile