RNA id: XM_034303836.1


Basic Information

Item Value
RNA id XM_034303836.1
length 2410
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113539958
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16278990 ~ 16284284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCAAGGGAGGAGGGAAGACAACATAGATAAGAAGTGAACACCCTAATTAAGAAGCTTTCCTAAGATTAATCCCTGCATTTGGAGGAGGTAAGACTGGGGGATCTACCAAAAGGATGTGAATACTGAATAGTATAGATCTCAACTGACAGgcacaggggaaaaaataaaattaatcactCCAGAGAGCAGTGACTATAGTTAACTATTTAATGGATTTTTAGCATATGAATCACTGATAGTAAGGGTAAAGTAGAAACCTGGAAATCTTAACATTTTTATAAGTCCTACCTTAgcatcaatttaaaattttcttttttgttattgttttactGTGAAGATATTTTGATTGTAATAAAATGTCTTTCATGGCAAGTGCTTTGGCAATATTAGACTCATGGGTATGAAAGACTGTACATAGAACCACTTTTGGTTCTATGAGAATGTATAGGAATTGAGATGTATAGGAATAAATAGACTTAAGTGCACACTGGTGATCACTTAGATAAAGCAGATGTACTTCAGCCAGAGCTTCATTCCTTTATCCAAGCACCTGATAAGCTTCAATTAGACATCTGTTAACCTATTAAATTATCAGCTGTGGTCTGACATTTTAACAGTCTTAACTCTTAGCAGTTTTAATTCTAATCAACCTTAGTCTAAATATGCATGTAAAGGTTACACAGTTTTTTGAAATAGACACTGAAGTCTCAATTGTTAGAAAATACTTCCAGAGAAACCTTACAAAACTTCCATCCAAGCCCTGCACTTAACAGATATTCTGACTCCTTAACTTTTTCTTACTTATTACACTTGCCTGTGCTCCTCTTTCCCCCAACCCACTCGCCTCTCTTTGCTTGCCTCAACTCTTACATTCTTTCCCTTCTTCCACCTCACTCCACTTTCTAAATGTATGTAGAGCTATGCTATGCCCGGGTAGCTTCCTCTCTGAGAAGCAGTTCCAGTGCTCCATCTGTTTAGATGTCTTTGACAATCCGGTCTCCACCCCATGCGGCCATAGTTATTGCATGAACTGCATCGGACAGTACTGGAATGGAGTCAAACTCTCTCAGTGCCCATTGTGCAAGGAAAGCTTTAAGAAGAAACCTGAGCTCCACATCGACCGCACTCTTCGTGAGATCACAGAGCAGTTCAAGAAGATGAAGGGGGAAGCTGGGGCATGTGGTGGGCTTCAGTTTAGCAAAGAAATATGCTTACATTGTGCTGAACAACCTTCCATGCATAATGAATGTGGTGTGGACTGTTGTCCTTCCTGTTTTGTCATGTTCTGTGTACCACGTTCAGTGCAGACTCAGATTAACattacagaaacaaaaatacaggaaatGATTGGACAAAGGCAGAGGAAAGTAGAGGAGATTAAATTATCAATGGAGATAAAAATGTCTGCAGAAAGAGAGATGCAGCACAGCATGCGTGTTCTGGGGCACTCTGTTGAGCGCAGCCAGGCCGagctgctgaagatgaatgaaatggGACAGCACTCAGCAGAACACAAGGCAGAAGGAATGATCagagagctggagctggagctcaCAGAGCTGAGGAAGAGAAGTGCAGAGATGGGTAAACTGGCCCAGAGAGATGACTACATCAGTAGACTGAAGATAAAGAAATGCAGGAATATGCAGCTATGTGAAGACTATATAAAAGTGGACATGATCTTGGACCCCAGTACGGCCCATTCTCTTCTCATCCTGTcagaagacagaaagaaggtGAGGTGTGGTGACAGGCACCAACTCCTTCCCAGCAACCCTGAGTGCTTTGATTGTATGGGGTGTGTCCTGGGCTGAGAGGCTTTCACTTATGGTTGGCACTACTGAGAAGTGGAGGTGGGAGGCAAGACAGACTGGGACTTGGGGATGGCCTGCCACTCTATAAATAAGAAGGGAAAAGTGACTGTCACCCCCAGCAATGGATACTGGTTCCTTACCCTACGAAATAACTATGCGTTTGGAACAGACCTTTCCCTCACCCTTCCCCTTAACCCAAAACCCAAAAAgattggtgtgtttgtggactATGAGAAAGGGCAAGTTTCTTTCTATAATGTGGAAGCTAAGCTGCACATctacacattcacagacacgtTCTGTGAGGCCATCTACCCGTTCTTCAGCTCCTGCACTAACAAGTTAGGCAAGAATGAAGCAGCACTTGTCATTACACCTGTTTTGCTTCCTGTCTGATGGATATGGTGGctgaaaactgttttgttttcagttttcttcaGTACAGTATTTAACTCACCAGAATGATACTTGTATGATTTACAGTGTGTTCTATCACTTATTTTCTGTGCAATATAGTTCTGTCTTTATACAAAAAGAATctttataataacagcaatgTTGTAATGTAAGTTCTATACTATGAAAGTAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 47875 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 215529 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 223845 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 277529 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 408219 15869198 ~ 15870771 (+) True G65115
TU77409 lncRNA downstream 107845 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 146177 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 147661 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 230353 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 285403 16569687 ~ 16577737 (+) True G65580
XM_026936367.2 mRNA upstream 1496 16264254 ~ 16277494 (+) True si:dkey-9k7.3
XM_026936368.2 mRNA upstream 14793 16256665 ~ 16264197 (+) True tkfc
XM_034303466.1 mRNA upstream 74788 16197701 ~ 16204202 (+) True LOC117597006
XM_034303835.1 mRNA upstream 126553 16145424 ~ 16152437 (+) True LOC117597111
XM_026937082.2 mRNA upstream 139120 16135364 ~ 16139870 (+) True LOC113540526
XM_026936115.2 mRNA downstream 7535 16291819 ~ 16298721 (+) True ovol1a
XM_034303998.1 mRNA downstream 15657 16299941 ~ 16310157 (+) True mus81
XM_026935826.2 mRNA downstream 25929 16310213 ~ 16319166 (+) True LOC113539780
XM_034303999.1 mRNA downstream 26930 16311214 ~ 16319166 (+) False LOC113539780
XM_026936976.2 mRNA downstream 59060 16343344 ~ 16349401 (+) True fis1
XR_003403994.2 other upstream 239006 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1620054 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2009650 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2559536 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2716724 13558623 ~ 13562266 (+) True cited1
XR_004578074.1 other downstream 25929 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 83672 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 476235 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 476465 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 476697 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile