RNA id: XM_034303841.1


Basic Information

Item Value
RNA id XM_034303841.1
length 3022
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC113540483
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21536003 ~ 21551810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGAGGAGTGTGAGAGCTCTGACAGGCGAACAGGAGCTGAACACAGTCTCAGCAGGCTCCAATGGCAGCTTTTTCACTTAGTGTGAACTACTTTTATCTTTAAAAAGGAGAATGTAAAGGAAAGAGACTTGAGGCTGGTCTACAGGAGGAAACAAGTGACACAAGTTGGGTACCTGTTTAGgTCAGCAGTATGAACTATGTGGGCCAGTTGCTGGGGACAGTCCGAGAGCTGTATAAAGGCCTAAATCAGGCTACTCTTTCTGGCTGTATTGATGTGGTGGTGGTGAAGCAGCCGGATGGATCTTTCCAGTGCTCACCATTCCATGTCCGCTTCGGCAAGCTGGGAGTTCTGCACTCCAGAGAGAAAGTGATTGACATTGAGGTTAATGGGTCACCAGTGGATCTGCATATGAAGCTGGGCGATAATGGGGAGGCTTTCTTCGTCCAGGAGACCAGGCATGCTGATGAATTGGTCCCTGCTCATCTGGTTACTTCACCAATCCCAACTGAGGAACCAGCATTCTGGGGCAGTGACTGTCACACATGTGAACCATGCCATCAGAACCGAGTAACAGAGGATGGAGGGAGTACcttgatgaaaaagaagaaaagaagaaagagaaaacacaaaactgaGCAGAGGAGAGAAGAGTCAGAGATGTCATCAGTTTGTGCACAGAGGGATTCAGCAGAACTCAGACAGCATCTTCCTTCTCGCTACATAGATAACTACCCACTGTCTGATGGAGACTGGGCTCCAgacagTAGGAGGGTGTCAGAGCCCAGCTCTCCTAAGAGTGACTCAGAACTGGCAATAAGGTCATCCGAAAATGTCATCCACCATCGCAACCATATGCagtggacatggggagaacttCCAGAAGCCACCAAGTTAAGTTGTAGGGAATGGGTGGAGCCTTTGAAGACGGTCAGCATTACACCAACAGACAGTACTCACTTTTGGGTCATTGACAGCATAAAAGCTATGGGAACAGGGATAGAGCAGAGAAAAGAATCTGTTCAAGCAATCATCAAACCTCAGCCTCAACCTCCCACCTCCAAACAAGAACCTCAGCTACAACCACAATCCATAATAAACCAAGCAGAtgttaaaatacacaaactacCACCTTTTCCACATGGATCAGAACCTCATTATACAGAACCTGACTCTGATCCTCAAGCAGAAGCAAACAAATCAGAGTCTTGTACCTACAAGTCACAAACTCATGTGCACCACATAGAGGGTCAGACATGCAGCCTGGaccaacacacacccaaaactgaaaaatatacCTCTAAAATCAGATCAAACCCTGGGGTCAAACCCcCTGCTGCTGCTCATCTGCTGGGAGACAAACCAGACACAGCCTGCGAAAGGAAAGGAgtgaggaaaaggagtcagcaTCAGGGACCAGAGGATATTTACCTGGATGATCTCACTGCTTTAGAGCCACATGTTGCAGCTCGCTACTTCCCCAAAAgtgagtcagTGGAGCAGTGGGAGGAAGGGTGTGTTCGATCTGGTTCTCCTCAGTCAGTGGGCAGTGCAGCCGCAGACAGTGGGACAGAATGTCTGTCTGACTCCACGCTGGACCTGCCAACCGTATCACTGTCACTCTGCGGAGGCCTTGGAGACAATGCTCATGTTAATAAGGagaAGTTTTTGGAACATATTGTCACCTATGAGCAGTTTGTTGACAACCCAGGCATCATTGACAACCCAAACTTGGTTGTAAGAATTGACAACAGATACTATAATTGGACTCTGGCTGCTCCACTTATTCTCAGTATGCAGGCCTTTCAGAAAACTGTTACCCAAGGTTTGACTTCAGCAGCTGAGGATACTTGGGTGAAACAGAAAATGCCAAAGAAGACGAACCGCTGGTGGTTCTGGAGGAAGAACAGTGTACAACAGTCAGAGACCCAACAAACGATATGCAATCCACTCAGTGGAAACCTGCACCATTATCATGACAGCCCTGATCCACAGCAGATGGCTGCAGCAGACTCGTCCACTGATGAAGACTCTAAGGAGCTGAGCACAGCTGCGTGTGCTGAGTGTGTACAAGCagcaggccacacacacacacactcctacaagAAATCATTACGGCTCTCATCAGATCAGATTGCGAGTCTGGGTCTTAAGGAGGGGCCGAATGATGTGGTGTTCAGTATCACGACGCAGTACCAGGGCACATGTCGCTGTGAGGGCACCATCTATCTGTGGCATTGGAATGACAAGATTGTCATCTCTGACATCGATGGCACCATCACTAAGTCTGACGTTTTAGGACATTTCCTTCCCCAGTTTGGAAAAGACTGGACACATCAGGGCATTGCTAAGCTCTACCACACTATACATGAGAATGGCTATAAGTTCTTATACTGCTCAGCACGTGCAATTGGGATGGCTGGTATTACTAGAGGATATTTACAAGGGGTTAATGATAGTGGCACCATTTTACCACAAGGGCCTCTCATGCTCTCACCGAGCAGCCTGCTTTCAGCTTTCCAcagGGAGCTGATcgagaagaaaccagagaagTTTAAGATCGAATGCTTAACTGACATCAGAAATTTGTTCCCTTCAAACTCTCAGCCTTTCTATGCAGCCTTTGGCAACCGCAGCAACGATGTGTTTGCCTACAAGCATGTGCAGGTTCCTACATGCCATATATTCACAGTAAACCCTAAAGGAGAGGTCATTCAGGAGCTGACCAAAGGCAACAAGACATCGTATAGTCGCCTCAGTGAGCTGGTGGATCACATTTTCCCCTTGGTTGGCAAAGAGCAAAGTGCTGCCCTATATTACCCAGAATTCAGTTCCTTCTGCTACTGGAGGCAGCCTGTCACTGAGATTAGTCAAGAAGATATCCTGTTACTCTGATTGGCAGAGACTGGAATTGATTTTAGCTGAAACACTGTTACTGTTTGTAATGATTCAAACAAATGAAGTcaaatttatcaaatatttctctttatgaGATCACAATAAAATaagtatataattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81294 lncRNA upstream 48515 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 214597 21321145 ~ 21321406 (+) False plag1
TU81190 lncRNA upstream 219488 21316255 ~ 21316515 (+) True G68435
TU80993 lncRNA upstream 301745 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 326679 21205745 ~ 21209324 (+) True G68304
TU81417 lncRNA downstream 181136 21732946 ~ 21749319 (+) True G68621
TU81415 lncRNA downstream 202298 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA downstream 202298 21754108 ~ 21762229 (+) False LOC113540377
TU81502 lncRNA downstream 362996 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 692778 22244588 ~ 22244825 (+) True G68947
XM_026936683.2 mRNA upstream 370 21496953 ~ 21535633 (+) True myom1b
XM_026936687.2 mRNA upstream 370 21496953 ~ 21535633 (+) False myom1b
XM_026936688.2 mRNA upstream 370 21496953 ~ 21535633 (+) False myom1b
XM_026936684.2 mRNA upstream 370 21496953 ~ 21535633 (+) False myom1b
XM_026936689.2 mRNA upstream 370 21496953 ~ 21535633 (+) False myom1b
XM_026935991.2 mRNA downstream 77267 21629077 ~ 21640157 (+) False mettl4
XM_026936822.2 mRNA downstream 189379 21741189 ~ 21748713 (+) True enosf1
XM_034303777.1 mRNA downstream 202270 21754080 ~ 21762301 (+) False LOC113540377
XM_026936530.2 mRNA downstream 215242 21767052 ~ 21776821 (+) True LOC113540212
XM_026936150.2 mRNA downstream 235380 21787190 ~ 21793201 (+) True LOC113539992
XR_003404073.2 other upstream 208583 21327346 ~ 21327420 (+) True LOC113540699
TU80896 other upstream 502250 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 1183518 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1381232 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1434905 20101025 ~ 20101098 (+) True trnar-ucu_2
XR_004577949.1 other downstream 77266 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 77266 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 200606 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 202208 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other downstream 202270 21754080 ~ 21762301 (+) True LOC113540377

Expression Profile