RNA id: XM_034303842.1


Basic Information

Item Value
RNA id XM_034303842.1
length 777
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC117597114
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22363682 ~ 22364458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACCAAGTTTGGAAAGGGCAGCATGGAGCTGCAGAAACTGctggagaaagacagaatgcTGGAAAAAATGCAAGAGAAAAATGAAGAGATGGCCAAAAAGATAAGAGAGCTTGAGAAGGACAGAGACGGATTTGAAGATCTCAGCTGGATGGAGACAGAGCAGGAGAATAGTCTCCAGAGAAAGAAGGCTGGGCTGGAGAATGAGAGGAAGAAATGTGCTGatctagagagagaaaaacaagagatGGAGGCCTCCTGGAGAGAACAGTCCAACCTGTGGCCGCAGAAGCTAAAAGAGAAAGACAACAAGCTGGAAAAAATGCGAGCAGAAAAAGAAGAGATTGCCAAGAAGATGCAAGAACTTGAGAAAGAAGAAGAGCGACAAGAAGATCTCAAACAGATGGAGCTGAATAATCTGCTAGGAGAAATACGAAGAGATACAAGAGAAATTAAGAAAgagcaggaggagaaagaaagtgCTCAGCTGGCACTCACTGAGCTTTTAATGCCAAAGACTGGGAATCTGCAACAAGCCCAGGTTCAGataaaagaggagaaagagcaaTACAAGCTGATGGTAGGAGAGGTGGAAAAGAGGAACGCTGCGCTTATGCGAAACATCATTGTGCTCCAGGCTTCCATCCAATATTTTGAAGAACAAGTAGAGATAGCAGAGAGGGTGAGACACATCTGGAAGAAAGAGAACGATAGcttggaaaaagagagagaggacttgcaaaaaaagaaaaagagtttgaagaaagagagagagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81775 lncRNA upstream 118857 22244588 ~ 22244825 (+) True G68947
TU81502 lncRNA upstream 445906 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 601400 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 601453 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 614363 21732946 ~ 21749319 (+) True G68621
TU81789 lncRNA downstream 18636 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 28381 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 162870 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 285485 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 562352 22926810 ~ 22938741 (+) True LOC113540593
XM_026936958.2 mRNA upstream 25306 22329268 ~ 22338376 (+) True ncf2
XM_034303791.1 mRNA upstream 46391 22272475 ~ 22317291 (+) True prkdc
XM_034303204.1 mRNA upstream 95290 22259992 ~ 22268392 (+) True abcf2b
XM_026936558.2 mRNA upstream 124058 22209820 ~ 22239624 (+) False smarcd3b
XM_034303926.1 mRNA downstream 3272 22367730 ~ 22382067 (+) True kif9
XM_034303927.1 mRNA downstream 3272 22367730 ~ 22382067 (+) False kif9
XM_034303843.1 mRNA downstream 119827 22484285 ~ 22495110 (+) True LOC113539999
XM_026936303.2 mRNA downstream 133100 22497558 ~ 22501861 (+) True atpsckmt
XM_026936302.2 mRNA downstream 140346 22504804 ~ 22525766 (+) True march6
XR_004578015.1 other upstream 601381 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 954046 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1744337 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2494568 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3343369 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3533677 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile