RNA id: XM_034303843.1


Basic Information

Item Value
RNA id XM_034303843.1
length 1597
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC113539999
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22484285 ~ 22495110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTTCAGAGAACTCTGCTGCTGGGTTCGAAGAAGACTACAGTTAAAAACAACTCAGGGGTGACGCCAGAGGGTCTGTGTGGTGCCTGGGTTAAAGAACCTGATGGAGGTTCCTTCACTTCTCCTAATTATCCTGAGAAATATCCTCCGGATAGAGAATGCATATACATAATAGAAGCATCTCCGAGACAATGCATCGACTTGTACTTTGATGAACAATACGCCATAGAGCCATCTTGGGAGTGCAAGTTTGACCACATTGAAGTTCGAGACGGCCCATTCAGCTCTTCACCCATTATCGGTCGATACTGCGGGCAGCAGAGCCCGATGTATGTGAGGTCCAGTGGGAGATACCTTTGGATTAAATTTGTTGCAGACAGTGAACTCGAGGCCATTGGGTTTTCTGCAAGATACAATTTCACTCAAGATCCTGAGTTTAAAGATGTTGGAACTCCTCTGTCACTGCCATtgtgtgagtttgagATGAGTGGGCCTGAGGGCATCATCGAGTCTGCTATGGTGGAAAAGGAGAGCAAGATTCTGCAAACGGAGGCTGTGGACTGCAAGTGGTTCATTCAAGCACCACCTGGTTCAAAGATCTACCTGCGCTTCCTGGAGTACGAGATGCAGAACTCGAACGAGTGCAAGCGCAACTTCGTGGCGGTGTACGACGGCAGCAGCTCAGTCGAGCACCTGAAGAATAAGTTCTGCAGCACGGTGGCCAATGATGTCATGCTGCTCACGTCGGTCGGCGTCATCCGCATGTGGGCTGATGAGGGCAGCCGCAAAAGTCGCTTCCGTATCCTCTTCACCACCTTCCGAGAACCTCCATGTGAAGAAGATACTTTCTTCTGCCACAGCAACATGTGCATTAACCACACTCTAGTGTGCAATGGTATCCAGAACTGTGTCTATCCTTGGGATGAGAATGGCTGCAAAGAGAAAAGGAAAACCACCATCTTGGACAGCCTGGACCACACCAACATGACCATAATCGGAGTGACCTGCAGTGTGGTGTTTGTTCTTCTCACAGTGTCAATCATCATCCAGGTCAAGCAACCACGCAGGAAGTACCTTGTGAGAACGGATGAATTTGACCCTGCGCTGTTGCCTGAGCCCCTCGAGCCACCACATTATGAGCTGTGCGCTCTGAGGAGCATGGCGTCTGCTGAGGACTTCCCTGGGCTGCGTCGCTCctcctccaagtgtgttcacGGGCACCATTGTGGCTCTCAGGCGTCCAGCGGCAGCCGCACTGACCTGAGCCTGGGTGTCCTCGCTGAAACGGCCAGCAACCCAGGCAGGAGCATCGTGGTGATGAAGCACAGCCACTCGCTTGAGGACACTGAGGTATGTGAGCTAGATGATGAGCTGGAGGATGAGAACATGGAGGAGCAGCCGTGGAGGAGTGTCAATGGACATGAGCATTCAGTCCATGTGCAATGATTTCTGACTGAGATTAACAGATTGTGCATGGAAGATTGACGCCATGGCAGAATGGAGATCTTTTTACCAAGTCTGTTAAAAATATTCGAGCTTCCCTACAACTAATATTGAAATTTTGTTAATGTCTTtataaacatgaagaaaaactaGA

Function

GO: NA

KEGG:

id description
K24360 NETO; neuropilin and tolloid-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81788 lncRNA upstream 87184 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 96540 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 239460 22244588 ~ 22244825 (+) True G68947
TU81502 lncRNA upstream 566509 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 722003 21754108 ~ 21762282 (+) False LOC113540377
TU81842 lncRNA downstream 32218 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 154833 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 431700 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 506888 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 789444 23284554 ~ 23284926 (+) True G69443
XM_034303926.1 mRNA upstream 102218 22367730 ~ 22382067 (+) True kif9
XM_034303927.1 mRNA upstream 102218 22367730 ~ 22382067 (+) False kif9
XM_034303842.1 mRNA upstream 119827 22363682 ~ 22364458 (+) True LOC117597114
XM_026936958.2 mRNA upstream 145909 22329268 ~ 22338376 (+) True ncf2
XM_034303791.1 mRNA upstream 166994 22272475 ~ 22317291 (+) True prkdc
XM_026936303.2 mRNA downstream 2448 22497558 ~ 22501861 (+) True atpsckmt
XM_026936302.2 mRNA downstream 9694 22504804 ~ 22525766 (+) True march6
XM_026936165.2 mRNA downstream 43708 22538818 ~ 22544587 (+) True ankrd33bb
XM_026936932.2 mRNA downstream 146632 22641742 ~ 22646438 (+) True si:dkey-94e7.2
XM_034303970.1 mRNA downstream 147102 22642212 ~ 22646438 (+) False si:dkey-94e7.2
XR_004578015.1 other upstream 721984 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 823394 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1613685 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2363916 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3212717 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3403025 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile