RNA id: XM_034303853.1


Basic Information

Item Value
RNA id XM_034303853.1
length 1444
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC117597120
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28885151 ~ 28887556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatcATGCTAAGCTGCTACGTTGTTAAATCAGGTCAGTGTGAGAGACAAAATGGCGGACACGCACAAATTCTGTTCTATTTACACAATATCACCAAaacactgaaatcatatttacGCGCTAATTATTTGATTTTGCTCCCGTTTTATTGgagtttattgtattttaagatTAGAAAGCTAATATAAAGTTTGGTGTTAACAGCGTCTTGGCAGCAATAAACCGTCTCGCgcttcagcagcactgagctTCACAGAACAAAGTGGAGCTgctacgtgattggctgatggtgcaACAGAGCAGTAAGGTTATTGGTTCCCGCGCCAAATGATTGACACTGGGCCCGCCTCCGATATGGCCgagttaaaataaatagaaaatgcagCTTTAGCTAAAGCGAAATTAATTAGCACTTGACACAGAAGCATGAAATGAtcctatgatgatgatgatgatgatgatgatgtgcttCATCTGCGGcagctagagagagaaaaataaacacatccaAACAAGTCTTTaagtttattctgtttaattcaatgaagaggagagaaaaacatcatcatcatcatcatcatcatcatcacggaTTTAGAACGTAAAGCTGTAAGAGATGGGGGACTGTGACGTCACAAGAGGAGGCTTTGGCGTCACAGGAGGAGAAGGGACAAAAAGTTTCAGGTTCTTTAGTTCAGTTACTGTATTTTACAGATCACATGCCAGagAAAGCAATCCGAGAGAAAACACTGAATTCATACCCACGTGATTCAAAGATGAGTAAGAAGAAGAGAAGTAGCCAGAGAAGAACAGCTGGAACAGCTGGAACAGCTGGAGCGTGCACTCGGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGAGGAagaATGGAAGGCTGTGACCAGGGACATGACGAAGAAGGTCACAAAGTTGGAGTTTGTGGCTCTGTGCACGAAAATCGTGATGTCAGCGGCGTCTTCTGCCATTCGGCGTTTACTGAAGCCTCTCATGGAAAGCTTCGGGATCGATTCGATTCTCCAGGCAAACGACAAGCTGAAGAAAATGCCTGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACACCTCAGCTCAAAGATCACCTATGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAGTCGTCACTCAGACAACAGCTGCGATGCTGGAGGCGATCCGGAGAGTGGCATCAGGACGGAGGACGATCTGCTCGGCGAGAGCTTCATCACCTGTAGAAGATCAGATCTCACAGCCAGATCTCAGCATCGCATGCACTAATGAGATCTGTGATAAGATCTTGGCTCTGTGTTACTCTGGTGATTTCGACAGCCCTGGAGGAGAGAAAACTTCAGCAGCGTCGCTAAAGTCCATAAAAATTTACCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86402 lncRNA upstream 11163 28873603 ~ 28873988 (+) True G72872
TU86346 lncRNA upstream 88014 28792847 ~ 28797137 (+) False selenot1a
TU85895 lncRNA upstream 93315 28787617 ~ 28791836 (+) True G72472
TU85891 lncRNA upstream 123700 28758555 ~ 28761451 (+) False gng5
TU85849 lncRNA upstream 226615 28658276 ~ 28658536 (+) True G72428
TU86425 lncRNA downstream 27073 28914629 ~ 28915189 (+) True G72889
TU86423 lncRNA downstream 27227 28914783 ~ 28915258 (+) False G72889
TU86429 lncRNA downstream 30186 28917742 ~ 28918398 (+) True G72892
TU86452 lncRNA downstream 43520 28931076 ~ 28931398 (+) True G72910
TU86455 lncRNA downstream 46427 28933983 ~ 28934309 (+) True G72913
XM_034303521.1 mRNA upstream 16973 28863057 ~ 28868178 (+) True LOC117597034
XM_026936512.2 mRNA upstream 42389 28832373 ~ 28842762 (+) True txndc12
XM_026936513.2 mRNA upstream 53423 28827952 ~ 28831728 (+) True LOC113540201
XM_034304057.1 mRNA upstream 61649 28814083 ~ 28823502 (+) True zgc:153615
XM_026936510.2 mRNA upstream 61649 28814083 ~ 28823502 (+) False zgc:153615
XM_034303522.1 mRNA downstream 13974 28901530 ~ 28906396 (+) True LOC117597035
XM_026936508.2 mRNA downstream 36055 28923611 ~ 28930532 (+) True cope
XM_034303336.1 mRNA downstream 53118 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303341.1 mRNA downstream 53118 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303338.1 mRNA downstream 53118 28940674 ~ 29042995 (+) False st6galnac5a
trnat-ugu_8 other upstream 1263768 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1264474 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1327249 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1328503 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1395826 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86682 other downstream 732437 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1858575 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1858575 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2174174 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 2463705 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile