RNA id: XM_034303854.1


Basic Information

Item Value
RNA id XM_034303854.1
length 1193
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC113540045
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29455551 ~ 29459295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTTCTGAGTCCGTCCCCTCGAGGATCCCTCAGCATTCCTGTTCACATCAACCTCCGGAGACGGCGCACGAGGAACCATGTTGGAACCATGTTGAACATAGGCTGGTTTCACAAGAATGTTAAATTGTCTTCATCTTGGTCCTACACCACTTGTGAAGATGGTCTGTGTTCTTGCAGAGAGCTCCTTCAGTACCCATCCTCTGTGCCCGAGTCGCAATGGAGAAGACAccgtggtggtggtgatggtggtggtgagaAGGCCAAAGCCCAGGTTCCTGTTTCCAGCGTAGGAGAGGAGAGAGCGTTGCTCCTGGGCTTCATCATGATGGCTTTCTCCATCCTCATGTACTTTGTGGTGGGGATCGTTGTGGTAAAGCCGTGTATCCACAGTGACTGGGGAGACGCCACCAACTGCTCGCTGATCCAGGCCGAGTTTCTAAACGAGCCTGACGAACGAGGCAGCAGTTATCCGTGTCTGCAGGTCTTGGTGAACATCACAGCTGAAACATCTGGAAAAACATTGCATCTGCGCTATGATGAAGCAGCCGTGAACCTGAGCCCAGAGTGTTTCTACACCCCGAAAAACCACCAAAACAAATCCGACGTGGTAGGAGAGGCTCGGAGAATCAAAGACGCCCTCTGTAAACTGCAAGAGCAAGGCCAGGCTGTAAGGTGCCACCTGAGCAACAAACGCTACCCAGAGGACGCCATCCTGACGAAGCGACACAACCTGCGCCTGGCACTGCAGTGCCTGGTGTGGCCAAGCCTCATGCTGTTCGGAGGAGCGCTGCTGGTTGGTCTGGTCATGCTCACGCAGTACCTTGCTTATCTCTGTAACGAAACCATTCAAAAAGAAGAAGGAATGGAGGACGGGCAGAGCACAGCAGGGAAGAACAAACTCTACCGATTTATGCCCTGCAGGCCCTGGAGTCCCAGCATAGAGGAGGAGGATTAAGGCAGCTAACCAAGCTCCATGTGTACAGTACAATGATACTGCAGTGGTTAAGGCTTGGACCTAGCaatcaaatcccaggactgcccCTTGAGTGGGTTCTTGAGCAACACCCTTAACCTTAAATTGCTTACTATATCGTGTGAAAGCATCTTGCAAATGAATACATGTATATTTGTGTTATAATCGTGATCATATGATATGGTCTTGACATGCAAGATGTTGAGTAGCAGGTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86551 lncRNA upstream 154418 29299135 ~ 29301133 (+) True G73000
TU86528 lncRNA upstream 259433 29181767 ~ 29196118 (+) False fubp1
TU86462 lncRNA upstream 401333 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 521242 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 524153 28931076 ~ 28931398 (+) True G72910
TU86633 lncRNA downstream 23967 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA downstream 59813 29519108 ~ 29521022 (+) True G73069
TU86649 lncRNA downstream 65003 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 66907 29526202 ~ 29526918 (+) True G73089
TU86653 lncRNA downstream 81800 29541095 ~ 29541435 (+) True G73092
XM_026937018.2 mRNA upstream 31783 29390033 ~ 29423768 (+) True ephb3a
XM_034303307.1 mRNA upstream 98762 29339123 ~ 29356789 (+) False pls1
XM_026937345.2 mRNA upstream 98762 29341259 ~ 29356789 (+) True pls1
XM_026937344.2 mRNA upstream 98762 29343300 ~ 29356789 (+) False pls1
XM_026935926.2 mRNA upstream 229640 29219526 ~ 29225911 (+) True LOC113539851
XM_026937112.2 mRNA downstream 21947 29481242 ~ 29496585 (+) True tbl1xr1b
XM_034303405.1 mRNA downstream 41180 29500475 ~ 29513779 (+) True b3gnt5b
XM_026936995.2 mRNA downstream 41180 29500475 ~ 29513779 (+) False b3gnt5b
XM_026936996.2 mRNA downstream 41180 29500475 ~ 29513779 (+) False b3gnt5b
XM_034303967.1 mRNA downstream 75339 29534634 ~ 29540015 (+) True dcun1d1
TU86406 other upstream 543447 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1834168 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1834874 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1897649 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1898903 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 160698 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1286836 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1286836 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1602435 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1891966 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile