RNA id: XM_034303860.1


Basic Information

Item Value
RNA id XM_034303860.1
length 747
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC117597128
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32316988 ~ 32319907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcatgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACAGTGCTGCTGTACAGAATCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtGGAGGTCTGAGTTCCAACCTTcccccaagaatgtctgctaaacTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAACAAACCTCCAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88394 lncRNA upstream 20454 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 109164 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 453831 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 453831 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 469122 31822525 ~ 31847866 (+) False LOC113540254
XR_004577915.1 lncRNA downstream 212939 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 369519 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 387186 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 418196 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 576897 32896804 ~ 32924735 (+) True G74672
XM_026936384.2 mRNA upstream 211697 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA upstream 211697 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA upstream 211697 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA upstream 211697 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA upstream 211697 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 814448 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 817144 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 854567 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 854567 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 854567 33174474 ~ 33249659 (+) False chd8
LOC117596937 other upstream 21422 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 21623 32280217 ~ 32295365 (+) True G74577
LOC117596933 other upstream 36212 32280014 ~ 32280776 (+) True LOC117596933
LOC117596951 other upstream 42465 32274035 ~ 32274523 (+) True LOC117596951
LOC117597127 other upstream 44854 32269344 ~ 32272134 (+) True LOC117597127
LOC117596959 other downstream 16181 32336088 ~ 32336582 (+) True LOC117596959
LOC117596952 other downstream 18404 32338311 ~ 32338811 (+) True LOC117596952
LOC117596931 other downstream 20588 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 36089 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 42734 32362641 ~ 32364748 (+) True LOC117597129

Expression Profile