RNA id: XM_034303886.1


Basic Information

Item Value
RNA id XM_034303886.1
length 2940
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113524717
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8917374 ~ 8924937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATCAGACAGACTTCAAGACACCTGGCGCCAATTTAGTTTAATCATGGAGGAGGGAGGAAGTGTGGTGGATGCTTCAACATGCAACAGCTCAAATACAGCACTTCAGCATCCTTGGCCACAATGAAGCAGCTTTTTGCAGTGAAGGCGAAGAAGGGCAATTGTGTCATTATGTCATGTCAGCTTTGCCTGCCTAGACCTGTTGAAATATCGGCATTCAAGAGTTCTTCCTCTAATTTGAAAAAACACATTGAGagaaaacatCCATCGAAATTAAAGCAGTACAATGAATGTgtcttgaaaagaaaaaactcagaAGAACAGAGGTGTGATTCAGCTGTGAAACAGATGAAGATTAAAGACTACTCCATGTCATGCAGGCAGGTTACTCAGTCCACAATTGACAGGCTTGTAGTTGAGTTTGTCTGGGAAAGCCTTCAGCCCTTTACCATAGTTGAACTTCCAACATTCAAAAATCTAATCCATACAATGCAACCTAGCTGTACAGTTATGTCCAGACCAACTGTGAAGTTGAGAATCGAGGAAGCAGCCgcaaaggtaaaaaaaaacattgctgagATGGCAAAAGTCAGCTATATAGATACCACTACTGATTGTTGGACAGCTCGACAACGGAGTTACATCGGTGTAACCGCACACTGGATCAATGAATCTACACTGGAAAGAAGGTCTGCTTCGATTGCCTTTAGACGCTTGAAAGGATCCATACATTTGATTTGCTTGCAGGGTGTTATGTGGCTAGGCGATAAGATGTTCAAAAGTGTCGCGCCGGCCCTGCTTGTCCGGGAGGACAATATATATGGTATGAAAGGAGCCAAGTGCGGAGACGGATCAAAAGACTCCGCCTAAAATGCGGCCGCCTAAAGCGGGACACGAACCGGAGAGTTTGTGAACCCCAAGCTGTAACTGAGCTAATTCTATTGTATGGGATTTGTGAGTGTTGCAGTGCTTGTGAAACTGGATCGGGAAGCTCAGATCCAACGGCTGAACTCAAAAGCGCTGCAGTGCGGCGGAAAAACAACTCAAAACTGGCCCTCCTTCTGGCCGAACTTAAAGGcaccaaatgagacaaaaatctcTAACTTAAGATGGCTGAATCTTTATCTGGGAGTGAGGACTCTCAGTCTGTcctcctctttagttttgtgcctacttcctctttaatcctgagctcccttttctttctttccctcaataatttctctccctttccttttctttctaaacctaaatattttattttatttcttttcttctcttctttttttacatATCAAAATCACCGATCAGAGTAGCGTGGCGCTGCTCTGTTACCTGGCACAGATCTATATCCGCACGCGGAGTGAGGCAATCAGAGGGCTTATAAAGAGGCGCGGCCAGGTGCTGCACGTTTACACTGATTACCTTCTTGAGATCACCTCGTTATAAAAGCCCGTGCAGGTGGCCGTGgatctgcctgagaaggcacctgcCGCGTTACACAGGGATCCTGGATGACATCCACTCGGAATATGGCATCTCAGGAAAAATAgtcagaacaacaacaactgatAGTGGATCAAATTTAATTAAAGCATTTAAGGTGTATGGTGAACAGAGTCAGCAAGAGTTGACTGGTGCTGACTCTGCTGAggcagtgacactggagagtgagGAAGATGCAGAAGGAGTTGAGGTTCAGGACACCTGTTCTATTTTAAACACTAACAGTGGGTTGGAGTATCATCTACCCGAGCATCAGCGTTGCGCGTGTCATCATCTTAATTTGGTGGCTACTGTGGATGCTTCCAAGGCAGAGGACAGCAGTGAGGTATATAAGAAGCTTACCCGTTCAACGTTTGCAAAATGCCAGGCATTATACAATAAAACCAGCCGGTCTGCCATCAATGCAGAGATTGTCCAAGAAGAATGTAAGCTGCAGTTCATTCAGCCCAACCACACAAGATGGAATTCGGTGTACAGTGCTGCAGAGAGGGTAATGCGGATCCTAAAGGAGCAGGGAGAAGCATCCCTTCAGAATCCTGTATCCATGGCCTTGAACATCCTTCAGTCTGAAACCAACACTCAGATGGGGTGGCTGCTTCCCACCATCTACCTTCTTGAATCCAAGTTCAAAAAGATGGAGAAGATGGAGGCTTCAGTCAAGGTATGTCTTCCCCTTATTCGTGCTCTGCAGCAGGGTCTACAAAAGCGCTTTGGGGAGTTTATGGAAGATCCGGAGCTCGTCAGTGCTGCAATTCTTCTTCCAAAATTCAAAATGTCATGGACAGACAAGGCCCACATCATAAAAGCAGGTATGGATTACATCCTGCATTATCTTGATGCCATTAAGGGCACCCAGCAAAACGAATCACAACACGATGCCTCTGACGAGGATGACTTCTTTTCTTCCATTAAGACTGTTCCATCCCCAACTGCATCTGAATTGGATGGATACTTGGCTTGTGCCTCAGAAGAGATGGGACTGCTTCACTCGTTTCCTTTGGTGAAAAAGCTAAGCCTCAAACTGAACACACCCTTGCCTGCCTCTGCAGCATTGGAATATACCATAGCGCTATTCAGGGCACTCCCCACACTCTTTCCTTCTCCGACTGCACCACCTAAGAAGCTGGGACATGCCAGTGAGGCATTGCTACATGTCCTTCAGCAAACAGAAGATCCCACAATCTACCTTCAGACGAGATCTCTCTCCAGCCCTGTTTTGCTGTTTGATGGTTCCAACTGTCTTATCGCTATTGGAACTACTCCCTTCACCACATTTGCCAAGGAAGACTTCAGTGAAGGCCTGCTGTATCTGATGGCTTACTACTACACCCTTCATCTTACATACTCTAAGTGTGTGGCAACCCTCTGGCAAACATCTGGAGGAGTTGGAGGGACTGATGTTCTGTGTTCAAGGAAtttaagaaaaaagtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578042.1 lncRNA downstream 24319 8888157 ~ 8893055 (-) True LOC117597151
TU72800 lncRNA downstream 36638 8879197 ~ 8880736 (-) True G61464
TU72796 lncRNA downstream 55628 8856303 ~ 8861746 (-) False LOC113526752
TU72795 lncRNA downstream 55628 8860266 ~ 8861746 (-) False LOC113526752
TU72775 lncRNA downstream 178894 8728354 ~ 8738480 (-) True G61445
TU72814 lncRNA upstream 10768 8935705 ~ 8936146 (-) False LOC113526752
TU72815 lncRNA upstream 11337 8936274 ~ 9152458 (-) False LOC113526752
XR_004578149.1 lncRNA upstream 68958 8993895 ~ 8994106 (-) True LOC117597240
TU72824 lncRNA upstream 96373 9021310 ~ 9235924 (-) True G61482
TU72833 lncRNA upstream 163770 9088707 ~ 9096874 (-) True G61489
XM_034303895.1 mRNA downstream 321749 8572259 ~ 8595625 (-) False LOC113526753
XM_034303894.1 mRNA downstream 338524 8572259 ~ 8578850 (-) False LOC113526753
XM_034303898.1 mRNA downstream 338524 8576612 ~ 8578850 (-) False LOC113526753
XM_034303896.1 mRNA downstream 341880 8571496 ~ 8575494 (-) True LOC113526753
XM_026914282.2 mRNA downstream 349386 8564114 ~ 8567988 (-) True LOC113526862
XM_026936304.2 mRNA upstream 389912 9314849 ~ 9327431 (-) True LOC113540087
XM_026936305.2 mRNA upstream 389912 9314849 ~ 9327324 (-) False LOC113540087
XM_026936307.2 mRNA upstream 389912 9314849 ~ 9322601 (-) False LOC113540087
XM_026936306.2 mRNA upstream 389912 9314849 ~ 9322601 (-) False LOC113540087
XM_034303876.1 mRNA upstream 389912 9314849 ~ 9322452 (-) False LOC113540087
XR_004578041.1 other downstream 338524 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 2018147 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2473559 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2736415 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2957829 5900249 ~ 5959545 (-) False G60166
TU72820 other upstream 58297 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 389912 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 412889 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 601637 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 851341 9776278 ~ 9805318 (-) True G61972

Expression Profile