RNA id: XM_034303891.1


Basic Information

Item Value
RNA id XM_034303891.1
length 3078
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC117597148
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8987729 ~ 8991452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATCAGACAGACTTCAAGACACCTGGCGCCAATTTAGTTTAATCATGGAGGAGGGAGGAAGTGTGGTGGATGCTTCAACATGCAACAGCTCAAATACAGCACTTCAGCATCCTTGGCCACAATGAAGGAGCTTTTTGCAGTGAAGGCGAAGAAGGGCAATTGTGTCATTATGTCATGTCAGCTTTGCCTGCCTAGACCAGTTGAAATATCGGCATTCAAGAGTTCTTCCTCTAATTTGAAAAAACACATTGAGagaaaacatCCATCGAAATTAAAGCAGTACAATGAATGTGTCTTGAAAGGAAAAAACTCAGAAGAACAGAGGTGTGATTCAGCTGTGAAACAGATGAAGATTAAAGACTACTCCATGTCATGCAGGCAGGTTACTCAGTCCACAATTGACAGGCTTGTAGTTGAGTTTGTCTGGGAAAGCCTTCAGCCCTTTACCATAGTTGAACTTCCAACATTCAAAAATCTAATCCATACAATGCAACCTAGCTGTACAGTTATGTCCAGACCAACTGTGAAGTTGAGAATCGAGGAAGCAGCCgcaaaggtaaaaaaaaatcattgctgAGATGGCAAAAGTCAGCTATATAGATACCACTACTGATTGTTGGACAGCTCGACAACGGAGTTACATCGGTGTAACCGCACACTGGATCGATGAATCTACACTGGAAAGAAGGTCTGCTTCGATTGCCTTTAGACGCTTGAAAGGATCACATACAAAAATAGTCAGAACAACAACTGCTAGTGGATCaaattttattaaagcatttaagGTGTATGGTGAACAGAGGCAGCAAGAGTTGACTGGTGCTGACTCTGCTGAggcagtgacactggagagtgagGAAGATGCAGAAGGAGTTGAGGTTCAGGACACCTGTTCTATTTTAAACACTAACAGTGGGTTGGAGTATCATCTACCCGAGCATCAGCGTTGTGCGTGTCATCTTAATTTGGTGGCTACTGTGGATGCTTCCAAGGCAGAGGACAGCAGTGAGGTATATAAGAAGCTTCCCCGTTCAACGTTTGCAAAATGCCAGGCATTATACAATAAAACCAGCCGGTCTGCCATCAATGCAGAGATCGTCCAAGAAGAATGTAAGCTGCAGTTCATTCAGCCCAACCACACAAGATGGAATTCGGTGTACAGTGCTGCAGAGAGGGTAATGCGGATCCTAAAGGAGCAGGGAGAAGCATCCCTTCAGAATgctAAATCCTGCTGAAGTTTCTTACCTCTCTGAATACTGCACTGTGATGAAGCCTGTATCCATGGCCTTGAACATCCTTCAGTCTGAAACCAACACTCAGATGGGGTGGCTGCTTCCCACCATCTACCTTCTTGAGTCCAAGCTCAAAAAGATGGAGGCTTCAGTCAAGGTATGTCTTCCCCTTATTCATGCTCTGCAGCAGGGTCTACAAAAGCGCTTTGGGGAGTTTATGGAAGATCCGGAGCTCATCAGTGCTGCAATTCTTCTTCCAAAATTCAAAACGTCATGGACAGACAAGGCCCACATCATAAAAGCAGATAAGATGTTCCTAATATTTTGTCAGGAGTCATGGGTACATTTTGCTTATCCCACTTGTAACTGGTCCACTACTGTGTATGGGTTTGTGTGGAGTTAAGCTATTGgttcaatatttatttacttgccTACTGTAGCACAGTCAGACTGTGAAACAGTGTTAGAAAAGACAAGGGTATTGAGGGGTTATAGGGGAGTAAATGCAGCAGGGCTTATGTAGCAAGTGAacggttttatttaatttctaaactATCCATGAAAACCCCAATAGTTGGTCCATAACACACTAGTAAACATGCCATAGTTTGTCTGTCAGCATTAtccacaattattattaatgtttgtgtgtatggtaGGTATGGATTACATCCTGCATTATCTTGATGCCATTAAGGGCACCCAGCAAAACGAATCACAACATGATGCCTCTGACGAGGATGACTTCTTTTCTTCCATTAAGACTGTTCCATCCCCAACTGCATCTGAATTGGATGGATACTTGGCTTGTGCCTCAGAAGAGATGGGACTGCTTCACTTGTTTCCTTTGGTGAAAAAGCTAAGCCTCAAACTGAACACACCCTTGCCTGCCTCTGCAGCATGTGAGCTCCTTTTTAGTTGTGCTGGGCAGCTGTTTACACCTAAACGAGCAAGGCTGGACAGTACAAATTTTGAGAATCAGCTCATTGTAAAACTGAATAACAAATTCAGAATATAGGCTCGTTGTTGACCCCTGCGCTAAAATCGCTGCAAGCCTGCGTTCATGTTCAGAGACTTGTCAGTTAATGCATGTTCTATTCACTTCAGTGTAATTTTCTAATTTGTGCTACAGGCTCATctttttatgttaaattgtTAATGTACAATGCTTTGCAACCTTTATTAACCTGCAAGAAGACCTCTACAGAATGCTTGTCATAAATGTTACCTGATTATTGGTTGCTTTATCAAATATTACATGCCTGGATTTTCAGTGCTAGCAGTCAGAACAGGGTTCCCACAGGTCcttgaaagtttgtgaatctgaaaaaaaagtcaaggcCCTGGAAAgtttttgaaaataaacatacatagaTACAGAAGATTACAAAGAATGGCTTGCCAGAGATCCAAAGGACCATCACTTGGCCAGGTGCAGAGCCTGTTGTAAATCTCTCAAAGTGCATAGGATGGGAGAAGCGGCTCTTTCAAGTCATGCAGCTGGATCTACACACAAGACGGCACTGCGGAAATCGGAAGCAGGTAAGTCCTACCATAGCCTGCATCTGACATAGAAATGTTGATTTCGAAGGCTGTTGAGTTGTTGGCGATGTGGATAAATTTGCACCAGCTCTGCAATCGGCACTCCAGTCACGCCACGTtcatttatatagcgctttatACAACAGATTGATTTAAAgaagtggttctcaaagtgtgGTACGAGTGCCAGTAGTGGTACTCAGGCTCCCTCTAGTGGTGTGCAGAGGAAtcactaaattaaatataaattaatgttaaaacacaatacattttaatttcatctttgagtattttttattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578044.1 lncRNA upstream 71888 8910787 ~ 8915841 (+) True LOC113524706
TU72680 lncRNA upstream 72745 8910660 ~ 8914984 (+) False LOC113524706
TU72681 lncRNA upstream 72745 8910660 ~ 8914984 (+) False LOC113524706
TU72682 lncRNA upstream 72745 8910660 ~ 8914984 (+) False LOC113524706
XR_004578043.1 lncRNA upstream 75714 8910677 ~ 8912015 (+) False LOC113524706
TU72700 lncRNA downstream 8070 8999522 ~ 9050524 (+) True G61377
XR_004578047.1 lncRNA downstream 176104 9167556 ~ 9169479 (+) True LOC117597154
TU72737 lncRNA downstream 250485 9241937 ~ 9243155 (+) False LOC113539869
TU72864 lncRNA downstream 323407 9314859 ~ 9317134 (+) True G61519
TU72865 lncRNA downstream 328709 9320161 ~ 9322444 (+) True G61520
XM_034303899.1 mRNA upstream 151158 8834823 ~ 8836571 (+) True LOC117597150
XM_034304095.1 mRNA upstream 446438 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA upstream 446438 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_026914284.2 mRNA upstream 463441 8509133 ~ 8524288 (+) True vangl2
XM_034303539.1 mRNA upstream 483076 8465305 ~ 8504653 (+) True arhgef11
XM_026936309.2 mRNA downstream 337883 9329335 ~ 9332782 (+) True LOC113540089
XM_026937204.2 mRNA downstream 437273 9428725 ~ 9434604 (+) True pnp5a
XM_026937201.2 mRNA downstream 636296 9627748 ~ 9641910 (+) False sf3b2
XM_026937200.2 mRNA downstream 636297 9627749 ~ 9641910 (+) True sf3b2
XM_034303599.1 mRNA downstream 657852 9649304 ~ 9707936 (+) True LOC113539871
TU72678 other upstream 91000 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 263289 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 924890 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2391168 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2557152 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 767008 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 815869 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 869442 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 869442 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 920945 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile