RNA id: XM_034303932.1


Basic Information

Item Value
RNA id XM_034303932.1
length 2792
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113539792
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19919480 ~ 19943834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggtagGTGCGTAATAAGGGACACCTCTAAAGTATCTGGTAGATTATCATTATGCCTTCCTGTTAATTATGGATCCCTGATGCCCTGATTAAATGATTCAGATAAGGTCGAGTTGTTTGCTTGCCGGTATTTCAGTGGGATATTACGGTATATAGATGCATAAAGCTAACATGGCACATAGTTAAGTGTAATGACTGTAGGCGGGTTTGCGTGCTGTAACTATGGCTGTTGGCTGCTGAAGACAGACAGGACACAAACAGGACGCGGCACCAGTGACAACGCTGTGCTAAAGAATAATAATTCAGTGAAACCGATTTATCACTGCATCTTTACTGTTTCAGAAAAAATATCTATAGCTTTTATCCAGTGGGACGCTGGGAGGCTTAAAATTCAACAATGTGGTCAATTCACAGAGCTGGGATTgcacttaaaaagaaaaacaaaacaAAACATGAAGCTGTAAATTTTCCACCCATTTCCAATGGCCCTGTTAAGTCACTACCACAATATGATAGGGAGCTAACTGCCTCTCACAGACTACAAGAGCTTTTCTTCTCCCAGGGTCGAACTGACCATGGACCTCTTAATAGGACAATCAAGAACAAGAAAATCTCAAGCCATCAGGTTGCTCCTTATGCCAAAGTAAGTATGGAGATGGATCTGAAGATCACTGCCCACCTCAAATACCATTTACAACAACGGTATTTGAAGACTTCCTGCCATTGTTTGTCTCCTGGAAAGGAGAGAGCTGAAGATTTGACCTTACTGACCACTGAAACATTTTTGTTGAAGGACAAGGCTCTGAAGACCTCATTTAATGTCAGCGAGGCTGCGGGCTCATTGGACGCTGAGCCACAGTTTCTGCCAAGCTTAATAATGGAGGAGAAGTGGGTCAAAGATGGCTTTCCTGCTTTACCATATTGTGCACACAAGGTGCCACGCCTAGGCTCTTCTCAGGGAACATGTGGAGGCTGTCAACTTGAGAAGACAAATAGTTCACTTTCTAAGAAAAGGGATGAAAAAGGCCATTATGTCCAGGACTGTATAAGAGCAAATTCCCTGCAATGGGAGACAGATGGACTTTGTCATGTCAAGAGGAGGATTATGATCTATTTGTGTGGGGGATATAGAGATACAGTTGCAGAGCGTACTGCGCTGATGGAGAGCGTGTATCCTCAGCTGTACCTCTACTGTAAGCAGAGAGGGTATGATTTCAGAATGATTGACCTGCGCAGAGGTGTGGAAGACCCCGTTACTGACCACCATGACTCAGTAGAGCTGCATTTAGAGATGCTTAAGAAGTGCCAAGAGACAGAGGGGCCAAACTTTTTTCTGTTCACAGGTCAGAAGCACGAGATCCAGTCATTACCAACCACCATCTCCCAAAAAGACTTTGAGGCAATTTTGAAAATTGTTATAAGAGACAGGGAAAGAGTTTCCAAGAGGCAGTCTGACTTGGAAGAAACAGCCACTGAAACTCAACCCAGCATTACCAATAGCAGTGCTGATAGTTTTACACTGGAACCAGAGAGGCCTGAAAAAGAGGGGAATACAGGAAACACTGCTTTAATGAGGGAAGACACCAATTCCTAtggagaagatggagaagaGGTCTGCTTAACGAGATGTTGGGCAGACTTCGATCGAGATTTGACCCTCTTGCTGACATGGTACCAGCTAGATGAGAACACAGTTCCACCTGTGTACCGCCTGCTGCCTGTCAGTACACATCACCCTGACCTCCTGAGCCGTGATGGGGAGCGTAGGAAAGCAGCTAGGAAAGCATGGCATTTTTCCTGTAAGCGAATATGTCAGGTGCTGCAGCGCAGTGGACCAGAAGCCATCGGAGAGGCAGAAACTTTATGCCTGCTTAGGACAgtattgGACTGGGAGGTAGAACAGGGTCTCGGAGCAAAGCTCCCTGCTGAGGAGTACAGTCACTGTTATAAGCGCACCATCACTGACCTGCTATATAACCTGAAGAGTGAATATGCTTCACAGTTCATTGACCTGCAGAAAGGCAGAGCACAGCTCAACCACACCCTGTATCAAGCACAGCAGAGCTTCATCCATAACATCCACAGCAAGCTGCGACACACTAATATCTATGAGATTAACGTGAGCTGGGGCAGGAAAGGTCTCAGCCCCAAACATAACAGATCACATCAGTTCTACACGGAACGTCTCTGTTCTCATTTCCTACGCACAGTCGTGGCAGCCTTCAACAGGGTGATGCACGTAAGACCAATCAAAAGCTCTTTTGATATCATGAGAAAAGAAGCTTCACAAACTCAAATTCAGGAGGAGATTCAGCTTCACCTTAAACATGGAAAAACACTAGCACAGAGCTTTGAGCTTAGGCAAGAATTCCTGCTGGAAGTGAGGGATGCCCTGCAAAAGTCAGCCTCTTCCCAGAATGCTTTGCTGCTGTTAGGAGAGCCAGGTTTAGGGAAAAGCACCATCCTGGCCAAGGTGGCCAAGCTTTTACCAACTTGGATACCTGGACAGCAGAAATGTGCGTCTTCTCCTGCAAATGCTTTGTACACAGATAGTGGAAGTCTACTGCAAAGACTGCAAAAACACGGAAATATCAGAGTCCTTGGCACAGCTGTGCAACGAGCTGCATTCTTTGTTGATGTTGGTGGAAGAGAACAGGCCTCTGGCTCTGGTgcttgatggtctggatgagctGAGTGAAGAACAAGAAGCTAATCTGTCCTGGCTCTACACTCTACCTCGACATGTCTATGCTATCCTGTCTGCCAACACACAATCCACCTCTGCTCATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80085 lncRNA downstream 52445 19880163 ~ 19881566 (-) False zgc:112271
TU80065 lncRNA downstream 103261 19830550 ~ 19830750 (-) True G67562
TU80038 lncRNA downstream 109092 19769357 ~ 19824919 (-) True G67535
TU80059 lncRNA downstream 145463 19787961 ~ 19788548 (-) True G67556
TU80030 lncRNA downstream 304062 19616448 ~ 19629949 (-) True G67528
TU80274 lncRNA upstream 122696 20066063 ~ 20067059 (-) True G67719
TU80315 lncRNA upstream 184259 20127626 ~ 20132037 (-) True G67757
TU80460 lncRNA upstream 353955 20297322 ~ 20327561 (-) True G67891
TU80702 lncRNA upstream 616011 20559378 ~ 20566758 (-) True G68075
TU80707 lncRNA upstream 627032 20570399 ~ 20570930 (-) True G68080
XM_034303934.1 mRNA downstream 853 19919480 ~ 19933158 (-) False LOC113539792
XM_034303935.1 mRNA downstream 853 19919480 ~ 19933158 (-) False LOC113539792
XM_034303933.1 mRNA downstream 853 19919480 ~ 19933158 (-) False LOC113539792
XM_026936859.2 mRNA downstream 15583 19911733 ~ 19918428 (-) True si:ch211-212k18.7
XM_026936948.2 mRNA downstream 22952 19906654 ~ 19911059 (-) True LOC113540446
XM_026937194.2 mRNA upstream 9798 19953165 ~ 19957947 (-) True amdhd1
XM_026936930.2 mRNA upstream 19215 19962582 ~ 19965851 (-) True snrpf
XM_026937203.2 mRNA upstream 189392 20132759 ~ 20143530 (-) True ndufs2
XM_026936477.2 mRNA upstream 222344 20165711 ~ 20223868 (-) True focad
XM_034303463.1 mRNA upstream 470558 20413925 ~ 20419029 (-) True LOC117597004
TU80099 other downstream 45285 19888179 ~ 19888726 (-) True G67587
XR_003404109.2 other downstream 711168 19222739 ~ 19222843 (-) True LOC113540739
XR_004578062.1 other downstream 778794 19053707 ~ 19155217 (-) False LOC113540242
XR_003404118.1 other downstream 916611 19017270 ~ 19017400 (-) True LOC113540750
XR_003404117.1 other downstream 917058 19016823 ~ 19016953 (-) True LOC113540749
TU80179 other upstream 19249 19962616 ~ 19965838 (-) False snrpf
XR_003404107.1 other upstream 200417 20143784 ~ 20143889 (-) True LOC113540737
TU81225 other upstream 1382679 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 1424883 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 1424883 21368250 ~ 21371010 (-) True LOC113539989

Expression Profile