RNA id: XM_034303933.1


Basic Information

Item Value
RNA id XM_034303933.1
length 3361
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC113539792
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19919480 ~ 19943834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGCTTCACGGTCTGCCCTACCATCTCATACATTCAGGCCAGATTCTGTCTCTGCTCAGCCAGTGCCTCTTTAACTATGAGTTCCTGCTGCATAAAGTCTGGGGTCTGTCCATCAGCCATGTAGAAGAGGATATGAAAGCTGCTGTCATGCCAGATAAAGAGTTGCCTGATATAGATGTGTTGGCCCAggctctctgtctttcacatCCTGTGCTGTTGAAGGACCCATGCCAACTGGCATCTCAGTTACTGGGGCGTCTCCTCCACATCACTGCCCAAGATAAGCCTGTGGCTCCAGGTGACCCTCAGCGCTTCTCTTACTTGCATGACCTCTTGACACAGTGTCAGTACTCATCAGTGCCTGTCCTGGTGCCATCTTACAGCTGCCTCCTGCCACCaggaggaataacacacacagtacttgCAGGTCATATGAGTCCTGTAAAAGCACTGGCCTTGGGTCAGTATCATGCAATATCATGCTCTGAGGATGGAACCCTTTAACCTCTGGAAGTTGGAGGATTCAATAACCCTTGCCAAAACCATACCAAGTTCGGTGGTGTCTAATCCAGACTGTGCTCCTGAAGCGCTCACTCTCTGTCTGGAGGACACAGTATTGGCACTAAGGATGGGACACAGACTTCAGGTGCAAGAGGTGCACTCTGGAAAGGTGCTTTATACAGATGCAGGGTCAGTGGATGTTCCTGTTATTACATCTACCTGTGATGGACGACTGTTGGTGGTCTTTTACGATGGCAGTCGCATAGTCAAGgTGTTTGATTTAGCAGAGTCCTGCTCACTGCTTCACTGTGTGAACCTCACTCTTGGTTGTGACCCCATTCACAAAGACAACTCCATTCTGGTCTCCCGCAGCTCTCTTAAAGATTATGTCCTCTTTGGATATAGaaGTGGTGGAGAAGCTGCTGTTTTCAGTGCTAGAGCAGGATCAATATTGGTTACTCTAAAAGCTCAGCATCAGGCTGCCTCCATACAAGCTGTGGAAATGAACTCTCAGTACTTCCTTCTCTTCTGCAGGTATCCCTATAAGAGACACAGTGATATAATACACATCGAGCTCTTCAGCACTGCTTCTTTCCAGTACCTGCGCTCTATTATGGGCTGCAGTCAGGATTACATTTCCCATGTTACTATCAATAAGGGTGGCACCCATGTAGTGGCCTTTTGCCCCTCAACTCATAACAGGACCACAGAAATCAATACTTGGAATCTAGAGACTGAAGATCATAAACATATGGCACGATTCCCAGGCCTCCTGTCTGCAGGTATATGTTCTGACCTGCGTTTCTGTGTGGGGTTCTGTATGGGAGAGCGGTACCTGCGCGTGTGGAATCTGGCTTCCAGAATCAATGACCAGTCTCTCGTATACAACATCCACAGAGTACAGAGTGATGGCATTCAGGAGATTATAGCTATGGATAAATATCCCAGtTATGTAGTGTGTCGCAGCACACGCCCTGGTACCGTGCGGGTGTGGAACATAAGGCGAGCACGGTTCAGGGCTCGGCCTGTCCAGGTGGAACACAGCTTATTCACCAGTGCTGATGTTGCTTTGGTGCGAGACCTCAAACTTTATATCCTGACTGACCATGGCACTGCCACCTTCACTGATACACCCACACCAGTTTACCAGACCCTTCTGGTGTATGATCTTCTAACAAGAAGCTACATTAAGAAGCAGTCTGGCCTTTTCATTGTACCCTGCCCTGAACAGGACTACCAGCTCATGAAGGGGGAGCTACTGCTTGGCCTGTCAGAGACTCGTGACCATCTGATAATGTGGGACCTGAACTCTGGCTACATTAAAGGCCGCATTAAAATGAATCATAAGGATTCATTTCTGTCCAGCTCCGTGTTTGATGACAGCCAGCCCCTGAATATGCCTACTGGAGAGAGATCAGAGCTGGTGATGCCGTGGGACTGGCGCACAGAGAGCAAGACTGCCAGAAAGAGGAGACAGGAGAGTGAGCTACAGAGGGAAAAAGAAGTGCGGCAATGCTTAGAGAGGGAGAAATACAACTCCATAGACCAGTACCTCCTCAGTGGAGATGAAAAGGTGGTAATATGTTCCTACTTTGCCCATCACCTGAATGTGTTCAGTGTCGTCTCCCAGGAGCACTTGCACACACTTGATGATAGTTGGTCCCTTCTGGGTCTCCGTACTGCGGcgctcacacactcaggaaGGCACTTGGTCATCTCTAACTACAGTGAAGCCCAGCGATCTCCTTACCTCACTCTCTGGGACACACAGCATGGCAGAGTGCAAAAGAGACTGAAAAATGAACCTGGGATTTGTTGTGTGGCCATCACAGACGATGCCAGCAGGATTGCCTTTGGGATTGCAAACTGTAACAAATTAAAAGTGTGGGAGCCTTTTAGGAGAAAGCACAAGACCATCTTAGGATATGGGAGTCTGAAGCTGACTGTGTCCAGCAGGCTTTATATCACTGAGGGAGGAGCCAAAGCCATTTTGCTAGCAGATGAGGTGAGTTTATGGGACCTTGATGCTGGGTCGGTGCTGTCTGTCTTCACCCCCGACTCCAGAATTCAGTGTGTATCTGTTGTGGGTGATGAGAAGTGCACTCTCCTCTTAGGTTTCAGTGACATTTCCACTCTTATCAGCATGACCCTTAGCAAACAGGGGGTCACTAGAACAGGTAAAATTGCTCGCCATGAGCAACTGTTCGGGGAGTCCAGCAGcagtgatgaagaggaggactGAGGAAAAATAGGCCAAGTTAAGATGTTTGCAGGTTAAAAGTGAATAATATTACACAATACACTATGGGGCTGATTCAAGATTGTTGAGGAAGTAACTTTAAGCAATGGAAGAAAGACTACTCGTCAGCAATGGGATCAGTCATCCTGTGTTCCTTTAATGGTCACAAGATCGTGAGGTTATAACAAAACTACAGATCTCAGCTATATAGAGTGGCAACAGTGTACCACTGTGTATAGATTCAGATTTATTGTCAATAATCTTAAATTCAGAATTGTTTTATGGTGGAAAAGAAAGTCTTATTTTACATAGGAAGTATTTACAAGATTTTAGTTTGGTGTTACAACATTTGAGAATGTTATTTTTAGTCATGATTACATTATGTGGGTTCTGCCATGTGTTTTTGGTTCTTCTGGTTATTACTATGCACACTTTGCAACTAGGCTTTCCTGTTTCTTGTCACACGTACATCTTACAAAGAGTCGTCATTAAAACGGCTTCCTCCTGTGTGCTTCACTAGAAcaacaatacaataatacaaatacaacCAATTCCTGTACCTTCTATGacactgtgtttttcttttagtaTAACTAGTATTAAATGGTATATATGGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80085 lncRNA downstream 37914 19880163 ~ 19881566 (-) False zgc:112271
TU80065 lncRNA downstream 88730 19830550 ~ 19830750 (-) True G67562
TU80038 lncRNA downstream 94561 19769357 ~ 19824919 (-) True G67535
TU80059 lncRNA downstream 130932 19787961 ~ 19788548 (-) True G67556
TU80030 lncRNA downstream 289531 19616448 ~ 19629949 (-) True G67528
TU80274 lncRNA upstream 132905 20066063 ~ 20067059 (-) True G67719
TU80315 lncRNA upstream 194468 20127626 ~ 20132037 (-) True G67757
TU80460 lncRNA upstream 364164 20297322 ~ 20327561 (-) True G67891
TU80702 lncRNA upstream 626220 20559378 ~ 20566758 (-) True G68075
TU80707 lncRNA upstream 637241 20570399 ~ 20570930 (-) True G68080
XM_026936859.2 mRNA downstream 1052 19911733 ~ 19918428 (-) True si:ch211-212k18.7
XM_026936948.2 mRNA downstream 8421 19906654 ~ 19911059 (-) True LOC113540446
XM_034303972.1 mRNA downstream 8446 19901414 ~ 19911034 (-) False LOC113540446
XM_026936944.2 mRNA downstream 13461 19901414 ~ 19906019 (-) False LOC113540446
XM_026937102.2 mRNA downstream 37840 19879968 ~ 19881640 (-) True zgc:112271
XM_034303932.1 mRNA upstream 853 19934011 ~ 19943367 (-) False LOC113539792
XM_026937194.2 mRNA upstream 20007 19953165 ~ 19957947 (-) True amdhd1
XM_026936930.2 mRNA upstream 29424 19962582 ~ 19965851 (-) True snrpf
XM_026937203.2 mRNA upstream 199601 20132759 ~ 20143530 (-) True ndufs2
XM_026936477.2 mRNA upstream 232553 20165711 ~ 20223868 (-) True focad
TU80099 other downstream 30754 19888179 ~ 19888726 (-) True G67587
XR_003404109.2 other downstream 696637 19222739 ~ 19222843 (-) True LOC113540739
XR_004578062.1 other downstream 764263 19053707 ~ 19155217 (-) False LOC113540242
XR_003404118.1 other downstream 902080 19017270 ~ 19017400 (-) True LOC113540750
XR_003404117.1 other downstream 902527 19016823 ~ 19016953 (-) True LOC113540749
TU80179 other upstream 29458 19962616 ~ 19965838 (-) False snrpf
XR_003404107.1 other upstream 210626 20143784 ~ 20143889 (-) True LOC113540737
TU81225 other upstream 1392888 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 1435092 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 1435092 21368250 ~ 21371010 (-) True LOC113539989

Expression Profile