RNA id: XR_004578055.1


Basic Information

Item Value
RNA id XR_004578055.1
length 4217
RNA type misc_RNA
GC content 0.46
exon number 20
gene id LOC113539792
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19919480 ~ 19943834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAGTTTGTTTAAGCTTCTCTGAAGCGCACAGTCTCCAGAGCAGCCTGACATAGCGGCCATTTTACTGACACGATAAAAATAATGCAGGGCatgatgggaaatggagtcagGTGCCTACAAGCGCTCATAAAACACACGGTGCCTGACAGTACAGTCTCAGCAAGGAAAGCGATGCAGACTGAACAAATGATAAAAAgagaagataataataataataataataataataataataatagcaacaacaacaacaacaataataataataataatgcagggcatgatgggaaatggagtcagGTGCCTACACGCGCTCATAAACACATGGTGCCTAACAGTGTAGTTTTAGCAAGTAAGCGATGCAGACtgaacaaatggaaaaaagaggatactactactagtactactactaatAAAAAATATCTATAGCTTTTATCCAGTGGGACGCTGGGAGGCTTAAAATTCAACAATGTGGTCAATTCACAGAGCTGGGATTgcacttaaaaagaaaaacaaaacaAAACATGAAGCTGTAAATTTTCCACCCATTTCCAATGGCCCTGTTAAGTCACTACCACAATATGATAGGGAGCTAACTGCCTCTCACAGACTACAAGAGCTTTTCTTCTCCCAGGGTCGAACTGACCATGGACCTCTTAATAGGACAATCAAGAACAAGAAAATCTCAAGCCATCAGGTTGCTCCTTATGCCAAAGTAAGTATGGAGATGGATCTGAAGATCACTGCCCACCTCAAATACCATTTACAACAACGGTATTTGAAGACTTCCTGCCATTGTTTGTCTCCTGGAAAGGAGAGAGCTGAAGATTTGACCTTACTGACCACTGAAACATTTTTGTTGAAGGACAAGGCTCTGAAGACCTCATTTAATGTCAGCGAGGCTGCGGGCTCATTGGACGCTGAGCCACAGTTTCTGCCAAGCTTAATAATGGAGGAGAAGTGGGTCAAAGATGGCTTTCCTGCTTTACCATATTGTGCACACAAGGTGCCACGCCTAGGCTCTTCTCAGGGAACATGTGGAGGCTGTCAACTTGAGAAGACAAATAGTTCACTTTCTAAGAAAAGGGATGAAAAAGGCCATTATGTCCAGGACTGTATAAGAGCAAATTCCCTGCAATGGGAGACAGATGGACTTTGTCATGTCAAGAGGAGGATTATGATCTATTTGTGTGGGGGATATAGAGATACAGTTGCAGAGCGTACTGCGCTGATGGAGAGCGTGTATCCTCAGCTGTACCTCTACTGTAAGCAGAGAGGGTATGATTTCAGAATGATTGACCTGCGCAGAGGTGTGGAAGACCCCGTTACTGACCACCATGACTCAGTAGAGCTGCATTTAGAGATGCTTAAGAAGTGCCAAGAGACAGAGGGGCCAAACTTTTTTCTGTTCACAGGTCAGAAGCACGAGATCCAGTCATTACCAACCACCATCTCCCAAAAAGACTTTGAGGCAATTTTGAAAATTGTTATAAGAGACAGGGAAAGAGTTTCCAAGAGGCAGTCTGACTTGGAAGAAACAGCCACTGAAACTCAACCCAGCATTACCAATAGCAGTGCTGATAGTTTTACACTGGAACCAGAGAGGCCTGAAAAAGAGGGGAATACAGGAAACACTGCTTTAATGAGGGAAGACACCAATTCCTAtggagaagatggagaagaGGTCTGCTTAACGAGATGTTGGGCAGACTTCGATCGAGATTTGACCCTCTTGCTGACATGGTACCAGCTAGATGAGAACACAGTTCCACCTGTGTACCGCCTGCTGCCTGTCAGTACACATCACCCTGACCTCCTGAGCCGTGATGGGGAGCGTAGGAAAGCAGCTAGGAAAGCATGGCATTTTTCCTGTAAGCGAATATGTCAGGTGCTGCAGCGCAGTGGACCAGAAGCCATCGGAGAGGCAGAAACTTTATGCCTGCTTAGGACAgtattgGACTGGGAGGTAGAACAGGGTCTCGGAGCAAAGCTCCCTGCTGAGGAGTACAGTCACTGTTATAAGCGCACCATCACTGACCTGCTATATAACCTGAAGAGTGAATATGCTTCACAGTTCATTGACCTGCAGAAAGGCAGAGCACAGCTCAACCACACCCTGTATCAAGCACAGCAGAGCTTCATCCATAACATCCACAGCAAGCTGCGACACACTAATATCTATGAGATTAACGTGAGCTGGGGCAGGAAAGGTCTCAGCCCCAAACATAACAGATCACATCAGTTCTACACGGAACGTCTCTGTTCTCATTTCCTACGCACAGTCGTGGCAGCCTTCAACAGGGTGATGCACGTAAGACCAATCAAAAGCTCTTTTGATATCATGAGAAAAGAAGCTTCACAAACTCAAATTCAGGAGGAGATTCAGCTTCACCTTAAACATGGAAAAACACTAGCACAGAGCTTTGAGCTTAGGCAAGAATTCCTGCTGGAAGTGAGGGATGCCCTGCAAAAGTCAGCCTCTTCCCAGAATGCTTTGCTGCTGTTAGGAGAGCCAGGTTTAGGGAAAAGCACCATCCTGGCCAAGGTGGCCAAGCTTTTACCAACTTGGATACCTGGAGATGTGactgtgttggtgtgttttgttgGACTGACATCAGACAGCAGAAATGTGCGTCTTCTCCTGCAAATGCTTTGTACACAGATAGTGGAAGTCTACTGCAAAGACTGCAAAAACACGGAAATATCAGAGTCCTTGGCACAGCTGTGCAACGAGCTGCATTCTTTGTTGATGTTGGTGGAAGAGAACAGGCCTCTGGCTCTGGTgcttgatggtctggatgagctGAGTGAAGAACAAGAAGCTAATCTGTCCTGGCTCTACACTCTACCTCGACATGTCTATGCTATCCTGTCTGCCAACACACAATCCACCTCTGCTCATTTGCTACAGACTCAAGCTAAGGTCTCAGTTCTTGCTATTCCTCCTCTGAGCAGTGAGGAAATCAAAGCCAGTCTGACCTCTAAACTTGTGGCTGATTCTTACCAGCTTCAAGAGGACCAGTGGAGCCTCTTACTGCACTCGTGTCTCTCCTGTCCTTTTCCTATGTATCTTAGATTTGCCTACAGTGAAAGCAGAAAGTGGACCTCTTTCTCCTCACCAGAACAGCTCTCCCTTCCTGGGGACTTGAAAAGTCTTTTCCTGATCCTCTTGGCATGTTTAGAGCGTGAGTATGGTGAGAACCTGGTGCGACGCGCTACATcgctgatctctctctcacgtGGTGGAGTGACAGAAGAGGAACTTCTGAAACTGTTAGGACATGACAGGCGGGTTGCTCAGGAGCTTACACAGTTATACAATCAGACTCCGACCACCTCAGGATATCCCAGTGTGCCTTATGGTATTTTGGCCCGGCTGAGGTGGGAACTCAGGTATCACATTATGGAGGTGGAAAGTGATGGGACATGGGTATTGCGCTGGACCCACACTGAATTCAGCCATGTCATCACCCAGCGCTATTTGAAAACAGAAGACTCGAAGAAGGCTATCCATGCAGATTTTGCAGATTATTTCAGCTGCTGTGCTTCTGATAGTCATATTTTCCAGCCACTTGCATGGAGTAGAGAGGAAAATCGGCAGGAAAGGTTATGTGTTTAATTTGCGTAAGCTTCACGGTCTGCCCTACCATCTCATACATTCAGGCCAGATTCTGTCTCTGCTCAGCCAGTGCCTCTTTAACTATGAGTTCCTGCTGCATAAAGTCTGGGGTCTGTCCATCAGCCATGTAGAAGAGGATATGAAAGCTGCTGTCATGCCAGATAAAGAGTTGCCTGATATAGATGTGTTGGCCCAggctctctgtctttcacatCCTGTGCTGTTGAAGGACCCATGCCAACTGGCATCTCAGTTACTGGGGCGTCTCCTCCACATCACTGCCCAAGATAAGCCTGTGGCTCCAGGTGACCCTCAGCGCTTCTCTTACTTGCATGACCTCTTGACACAGTGTCAGTACTCATCAGTGCCTGTCCTGGTGCCATCTTACAGCTGCCTCCTGCCACCaggaggaataacacacacagtacttgCAGGTCATATGAGTCCTGTAAAAGCACTGGCCTTGGGTCAGTATCATGCAATATCATGCTCTGAGGATGGAACCCTTTAACCTCTGGAAGTTGGAGGATTCAATAACCCTTGCCAAAACCATACCAAGTTCGGTGGTGTCTAATCCAGACTGTGCTCCTGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80085 lncRNA downstream 50024 19880163 ~ 19881566 (-) False zgc:112271
TU80065 lncRNA downstream 100840 19830550 ~ 19830750 (-) True G67562
TU80038 lncRNA downstream 106671 19769357 ~ 19824919 (-) True G67535
TU80059 lncRNA downstream 143042 19787961 ~ 19788548 (-) True G67556
TU80030 lncRNA downstream 301641 19616448 ~ 19629949 (-) True G67528
TU80274 lncRNA upstream 122229 20066063 ~ 20067059 (-) True G67719
TU80315 lncRNA upstream 183792 20127626 ~ 20132037 (-) True G67757
TU80460 lncRNA upstream 353488 20297322 ~ 20327561 (-) True G67891
TU80702 lncRNA upstream 615544 20559378 ~ 20566758 (-) True G68075
TU80707 lncRNA upstream 626565 20570399 ~ 20570930 (-) True G68080
XM_026936859.2 mRNA downstream 13162 19911733 ~ 19918428 (-) True si:ch211-212k18.7
XM_026936948.2 mRNA downstream 20531 19906654 ~ 19911059 (-) True LOC113540446
XM_034303972.1 mRNA downstream 20556 19901414 ~ 19911034 (-) False LOC113540446
XM_026936944.2 mRNA downstream 25571 19901414 ~ 19906019 (-) False LOC113540446
XM_026937102.2 mRNA downstream 49950 19879968 ~ 19881640 (-) True zgc:112271
XM_026937194.2 mRNA upstream 9331 19953165 ~ 19957947 (-) True amdhd1
XM_026936930.2 mRNA upstream 18748 19962582 ~ 19965851 (-) True snrpf
XM_026937203.2 mRNA upstream 188925 20132759 ~ 20143530 (-) True ndufs2
XM_026936477.2 mRNA upstream 221877 20165711 ~ 20223868 (-) True focad
XM_034303463.1 mRNA upstream 470091 20413925 ~ 20419029 (-) True LOC117597004
TU80099 other downstream 42864 19888179 ~ 19888726 (-) True G67587
XR_003404109.2 other downstream 708747 19222739 ~ 19222843 (-) True LOC113540739
XR_004578062.1 other downstream 776373 19053707 ~ 19155217 (-) False LOC113540242
XR_003404118.1 other downstream 914190 19017270 ~ 19017400 (-) True LOC113540750
XR_003404117.1 other downstream 914637 19016823 ~ 19016953 (-) True LOC113540749
TU80179 other upstream 18782 19962616 ~ 19965838 (-) False snrpf
XR_003404107.1 other upstream 199950 20143784 ~ 20143889 (-) True LOC113540737
TU81225 other upstream 1382212 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 1424416 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 1424416 21368250 ~ 21371010 (-) True LOC113539989

Expression Profile