RNA id: XM_034303942.1


Basic Information

Item Value
RNA id XM_034303942.1
length 2039
RNA type mRNA
GC content 0.53
exon number 8
gene id wrnip1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6550985 ~ 6572077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTAGTTGGTtcgcaagaagaagaagaagaagaagaagaagaagtctagcaccctatgtagtgcactccGTTTACAATATGGCGTCATTTGGGCCTGAAGCTGTAATTTGGTAATCCCTGACGTCAGAATCATTTGGCGCGAgtcgataataataataataaagatggcGGAGGAGGTGGTAGACATCGTGAAGTGTCCCGTTTGTGCTGGGGATTATAAGTCCAGTGAAATTAACTCTCACTTGGATAAATGTTTGGATCAAGGCTGGAAAAGCGAGGACGACCTGCGAGCAAGTGCCGGGCCTCCGGCTAAAAAGTCGCGCGTTAGCATGGAGGCTAAAAGCGGCTCTGGAGCTGCTGGAGTGGGAGCTGGGACTAGTGGGGCGGAAGTGAAACCAAGTCGACCTGCAGGTGCCGTGTTTTCAAtgttcaacaacaacaacaacaacaagtcGTTTTTATCGTCCAAACAGACGGCTAGTGAAGGTATGACACGAGGCACGGTGTCACCTAGCAACGCCCACGACAGCGCCACACTTCCGGGTTCGGATTCAGGAAACCGGAAGCAGTGTGCTGAAGCTGAGGTGCTGAACCAGAGGCTGCTGAACTCAGACAAACCTCTGGCGGAGAAGATGAGGCCCAGCACCCTGGAGGAGTATTTTGGGCAGAATAAAGTGTTAGGAGAGCACACACTGCTCAGAGCTCTGCTGCAGTCACAGGAAGTTCCCTCTCTGATCCTGTGGGGACCTCCCGGATGTGGAAAGACGACTCTGGCCCACATCATTGCCAGCTCCAGTAAAAAGAAAGGCACAGCACGCTTCGTGACTCTCTCAGCCACCAGCACGTCGACCAACGAGGTGCGAGAGGTGATCAAACAGGCGCAGAACGAGCTCCGACTCTGCAAGAGGAAAACCATCCTGTTCATCGATGAGATACATCGATTTAACAAATCCCAGCAGGACACGTTTCTGCCTCACGTGGAGTGCGGGACAATCACGCTGATCGGAGCGACCACGGAGAACCCGTCGTTTCAGGTGAACAGCGCTCTGCTGAGCCGCTGCAGGGTTCTGGTCCTTGAGAAGCTGAGCGTGTCAGCGATGAGCTCGATATTGCGCCGGGCCGTGGATTCACTCGGGCTGATTGTGTTACCGGATGACCGTTCAGGACCGGACTGCTCTGcagaGCGGCAGGTGTGTATCGAGCAGAAGGCCCTGGACACCGTAGCTCACCTGTGTGACGGAGACGCTCGAGCGGCTCTCAACGGCCTGCAGCTGGCCGTGCAGGCGTGTGTGAACAAGACCCTCAacgcagaaacacacactcctcagaaCACTGTGGTCCAGGAGGTGCATGTCAAAGAGGGTTTACAGAGATCGCACATCCTCTACGACAAAGCAGGTGAAGAACACTACAACTGCATCTCAGCCCTGCATAAGTCAATGAGGGGTTCGGATGAAAACGCTGCCCTCTACTGGCTGGGCCGGATGTTGGAGGGAGGTGAGGACCCGCTGTACGTGGCACGCAGGCTGGTGCGCTTTGCTAGCGAGGATGTAGGTTTGGCCGATCCCTCTGCGCTCACTCAGGCCGTGTCTGCGTTCCAGGCCTGCCACTTCATCGGCATGCCCGAGTGCGAGGTAATCCTAGCACAGTGTGTGCTCTACCTGGCCAGGGCTCCTAAGTCTGTCGAAGTGTATAAAGCTTATAACAATGTTAAGGCATGTCTGAGGAACCACAAAGGGCCTTTACCCCCCGTGCCGCTTCACCTCCGCAACGCTCCCACCAAGCTAATGAAGGAGCTAGGCTACGCTAAAGGCTACAAATACAACCCGGCATTCAACGGCCCAGTGGACCAAGAATATCTCCCTGAGGAGCTTCGCGGCATCAACTTTTTCACCTGGACGCCATCTGACTGATAAACTCGCACCACTTTTTATCCTTATGGAAATCAGAATGGAAATTAGGACTGGCCCACTGGACTAAAAGCACTGAAAAAACATTGTTGCTGTCATGTGAGAAAGATGTTTTGCATGAAAGCTAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71422 lncRNA upstream 124641 6426119 ~ 6426344 (+) True G60384
TU71400 lncRNA upstream 136972 6413800 ~ 6414013 (+) True G60362
TU71349 lncRNA upstream 170523 6380245 ~ 6380462 (+) True G60312
XR_004577957.1 lncRNA upstream 245423 6301325 ~ 6305562 (+) False LOC117596997
XR_004577956.1 lncRNA upstream 246095 6301325 ~ 6304890 (+) True LOC117596997
TU71549 lncRNA downstream 23049 6595126 ~ 6596601 (+) True LOC117597080
XR_004578118.1 lncRNA downstream 50759 6622836 ~ 6623651 (+) True LOC113547253
XR_003404802.2 lncRNA downstream 76705 6648782 ~ 6651846 (+) True LOC113547233
TU71586 lncRNA downstream 112259 6684336 ~ 6685832 (+) False LOC113547228
TU71609 lncRNA downstream 217143 6789220 ~ 6797109 (+) True G60529
XM_026947472.2 mRNA upstream 346095 6202522 ~ 6204890 (+) True foxc1a
XM_026947454.2 mRNA upstream 373826 6171029 ~ 6177159 (+) True foxf2a
XM_026947455.2 mRNA upstream 387145 6162153 ~ 6163840 (+) True foxq1a
XM_026947555.2 mRNA upstream 513753 6014920 ~ 6037232 (+) True irf4a
XM_026947473.2 mRNA upstream 541201 5991928 ~ 6009784 (+) True dusp22b
XM_034303652.1 mRNA downstream 8278 6580355 ~ 6602411 (+) True dhx30
XM_026947481.2 mRNA downstream 72451 6644528 ~ 6647156 (+) False LOC113547232
XM_034303774.1 mRNA downstream 72570 6644647 ~ 6683316 (+) False LOC113547232
XM_026947478.2 mRNA downstream 108413 6680490 ~ 6683316 (+) True LOC113547232
XM_026947479.2 mRNA downstream 108414 6680491 ~ 6683316 (+) False LOC113547232
trnar-ucu_1 other upstream 120408 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 407348 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 411613 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 954859 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 1362939 5179562 ~ 5188046 (+) False LOC113547261
XR_004578001.1 other downstream 23049 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 1483979 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 2123275 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2322393 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 3186383 9758460 ~ 9774049 (+) False rbm14b

Expression Profile