RNA id: XM_034303952.1


Basic Information

Item Value
RNA id XM_034303952.1
length 4424
RNA type mRNA
GC content 0.53
exon number 19
gene id rasal2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26042923 ~ 26124146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGGAAGCGACATGTAGTGGACGTGTTCTTAGACAAAGTGGAGTCTAAACCTTTTATTGCGTACATCCTTCTCTAACATTTTGTCATATAAATAGGCCACACTAATGACAACATTGTTTCAACATTGATTGAAACAAAGGTGATCAAAGATTTCTTCATTTGAAGACGTCGTTGACTTTCTTGGGTATTGTGAGTGGGAACTCTCTGCCTCGTGCATTTATCTGACTGACTTCACTCTCATCCAAATGAGTCTAGAACGGAAAGCTACCCTTGTGGAGCGTCTGCGGTCTAGCAGAAACCCATCTCACTGCCTGACTGACGGAGAAAGTCCTCATCGatgggccatcctcagcaggcCCTGGCTGAAACACCGCTCCAACTCTGCCCCCATGGAGTCCTTGGACACTCTTGAGAGCAGAATCCGGTACAAGCAGCCTGTGCTCATCCAGGATCTGACCTGTTCTAACAGGAGCAGCTACACGTTACCTGCCAATGTCCCTGATGTCAGTAAAGTCACCAGCTCAGGCATGCTACTGGAACACGTTCCACCTGACTTGCCCTGCTCAGCCTACAAAAGAGACTATTTACGCTCAACCTCTGAGCCAGGTACCAGCCTTATAACAGAACCCCAACCTCTACAGGGGAAACAGAGTAGCCACCCATTTTCTGGGATACTCTTGTCCATGTCACGGCGCATAAGTAGGATCCTGACAGCCAGAGAGGAGCCAGTATCTGTGGAGATGGCAGAAGCTGATGTGAAAGGGCCGCCAAGCCACCGCTTCTCCTGTGGCCAGTCACCATTCTCCGAGTGCAGTGTCTGGGAGAAGAAGTACTGCATCCTGACTGACAACCAGCTCATCCTGCTCAACCGTGAGGAAGAAATGCCTGCAGAGATGCATGAAAGCCCCTCAGTTTTATTGTCCAAGGGCCGCAGCCTGAGGAGAACAGTCAGCGTGCCCTCTGAAGGACAGTTCCAAGAGTATCCAGCAGAGGGTGCATCCATGCTGGAAGTATCCTCAGATCGCTCCCCCAGACGGAGGAGCATCTCTGGCCTTGGCAGCTCTGAGAAGAACATCTCAGTGGATGGGCCCAACTCCTCACCCTTCAAAGTGCCAgGGTTTTTTAGTAAGCGACTGAAAGGGTCAATCAAGAGGACAAAGAGCCAGACTAAACTGGATCGGAACCCAAGCTTCAGGCTACCGTCACTGCGGCCTACTGAGAACGACAGGTCACGAGGCCTGCCCAAGCTGAAAGAGTCCTGTTCACATGAGTCTTTGCTCAGTCCTAGCAGTGCTGTGGAGGCACTAGACCTCAGCATGGAGGAGGATGTGTACATTAAACCGCTTCACAGCAGCGTGCTGGGACAGGAGTTCTGTTTCGAGgtgACGTACTCAGGGGGCACTAAGTGCTTCAGCTGTTCCTCAGCTTCTGAGAGAGACAAATGGATGGAAAACATCAGGAGGACTGTGCAACCAAATAAGGACAACTGCCGGCGTGCAGAGAATGTGCTGCGCCTGTGGATCATCGAGGCCAAAGACTTACCGCCCAAGAAGAGATACTTCTGTGAGCTGTGCTTAGATGATGTACTGTATGCACGCACCACCAGCAAGGTGCGCTCAGATTGCCTATTCTGGGGTGAGCACTTTGAGTTCGGTGGTCTACCTGCCATCAACAGCGTCACTGTGCATGTGTATCGTGATGctgacaagaagaagaaaaaagacaagagCAACTATGTTGGACTGGTGAACATCCCAGTGCAGGCCGTGAGTGGACGCCAGTTTGTGGAGAAGTGGTACCCAGTGAGCACACCCACCAGCAGCAAGGCGAAAGGCGGGGGCCCATCCATCCGTATCAAGTGCCGCTTTCAGAGTGTCGCAATCCTGCCCATGGAGCTGTACAAGGAATTTGCAGAGTTTGTCACCAACAACTACACTATGCTGTGTTCAGTGCTTGAGCCTGTAATCAGTGTCAGGAATAAGGAGGAGATGGCCAGTGCACTCGTGCATATACTGCAGAGTACTGGCCGAGCAAAGGACTTTCTGACAGACCTGGTCATGTCTGAGGTGGATCGGTGTGCAGATCATGACGTGTTGATCTTCCGGGAGAACACTCTAGCCACCAAAGCCATAGAAGAGTACCTCAAACTTGTGGGTCAGAAGTATTTGCATGATGCCCTAGGAGAGTTTATCAAAGCTCTGTATGAGTCGGACGAGAACTGTGAGGTGGATCCATCAAAGTGCCCCAGCAGTGAGCTGCCTGAACACCAAAGCAActtaaaaatgtgctgtgaGCTAGCCTTCTGCAAGATCATCAACTCCTACTGTGTCTTTCCACGTGAGCTGAAGGAGGTGTTTTTCTCATGGAAGCAACAGTGCCATGCTCGGGGGAAGCAGGACATCAGCCAGCGACTAATCAGTGCCTCGCTGTTTCTGCGCTTTCTCTGTCCAGCCATCATGTCGCCGTCCCTCTTCAACCTCATGCAGGAATATCCTGATGACCGTACCTCACGTACTCTCACCCTCATCGCTAAAGTCATCCAGAACCTTGCCAACTTCACCAAGTTTGGCAACAAAGAGGAGTACATGGCCTTCATGAATGATTTCCTGGAGCATGAGTGGGCAGGCATGACCCGCTTCCTGCTGGAGATCTCCAACCTTGAAACCATCTCCAACACACCGGGCTTTGAGGGATATATTGACTTAGGCCGTGAGCTCTCGCTGCTGCATGCCCTGCTGTGGGAGGTGGTGTCTCAGCTAGACAAGGGTGACAATTCCTTCCTGCAGGCGACGGTGGCCAAACTGGGGCCTCTGCCACGCATCCTGGGTGACATCACATGCTCACTGTCCAGCCCCACACCAATCCAGCAGCAGCTAAGACGTTTCCAAGACCATGGCTCCACCCACAATATCAGTGGCAGCATCTCTTCGGGACTGCAGGGGATATTTGAGGACCCAAATGACAGtgaaATTCGGAATGCCAAATCTCCAGTGCAAGAACATACAGAAGTTTTGTCATGTGGAAAGCCCCCCTTACTGTGCCAGCAGCCATCCCTGCACAGCATGAGCTTCTCTGACAAGGAGCGAGAGAGCCACCTGCCTAACGGGCGCAGCATCTCCCTGATGGACCTGCAGGACTCCCACCTTCTTCATGAAGCCCCACCGAGAATAGGCCGCATAGGTTCTCAAGCGTCCATCGACCCACTGCCTCCCCCTCTTCCTCACCTCCATCAccaccatccacagcagcagcaggccaAAGTGGTCACGCTAAAGGAAAACGTACCTCAGAGTGCACCACAGGTCTGCCGGCCTCTGCAACCATCTTTAAGCCAGCAGCGCAGCCTACAGCCACTCTGCTTTCAGAACCCTGTATACCAGCTAAGCAACATGCATGCACTGCGCTCATCTCAGGCGCCACTTCAGGCCcactccagctcagagaacctgAGCACAGCAAGCTTGCACAGTGCCAGCCCCAGCACTACACCCAGGAAAAAGTTGCCCTCCACCACCAGTCTCGAGGAGGAGGAAGCACCCTCTCCGTGCTGGCATACAGCCCTAGTCGACACCCAGTCAGGGCCACAAGTAATGGCTGTAGCCAGACAGAGTGGTGCGGGGACAGCACATATTGTAAAGGTGGAACAGCAAAGTAGAACAAATGGAGGGGTGTCACGCTCACTACCATATAGCATCTCACTACGCAGCAGTAGCAGTGTCAATATGGACCCACAACAGCAAAGTGAAGCTAGCTCCAGACAGCAGTCCATCTGCTCACGAGACAGCCCCATCCCAAGCAACAGAACTAACAGACAGgTGCACTCTCCTGTCGAGTCAGTCACCATGTCTCCTGTTGAGCGGACGGCAGCATGGGTGCTGAATAATGGCCAgtatgaggaggatgaggaggaaacCCAGAGCAAGAAGGAAAGCAAACATGTGGAGAAGTATGAGCAAGAGATCACAAAGCTGAAAGAccggctgtgtgtgtctggccGCCGCTTAGAAGAGTATGAACGCCGACTTGTGGCACAAGAGCAACAAATGCAGAGGCTGCTGCTGGAGTACAAGACTCGCCTGGAAGACAGTGAGGAGCGCCTGCGGCGGCAACAGGAGGAGAAGGACAGCCAAATAAAGAGCATTATCTGCAGGTTAATGGcagtggaggaggagctgaAGAGAGACCATGCGGAGATGCAGGCGGTTATAGACGCAAAGCAGAAGATCATAGATGCACAGGTCTCTAAAGGAGCTGAGGTTATACAAGCAGgaaaAGCGGATCAGCTCCCTTGATGCAGCTAACTCACGCCTCATGAGCGCCCTCACTCAGGTCAAAGAGCGCTACAGCATGCACAACCTTCGCAATGGCCTCTCGCCCACTAACCCCACCAAGCTCTCCATCACTGAGAATGGAGAGTTCAAG

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84503 lncRNA upstream 17541 26039182 ~ 26039383 (+) True G71322
TU84331 lncRNA upstream 128184 25923952 ~ 25928740 (+) True G71163
TU84210 lncRNA upstream 155008 25898135 ~ 25901916 (+) False LOC113539772
TU84510 lncRNA downstream 6053 26128619 ~ 26128826 (+) True G71329
TU84555 lncRNA downstream 82992 26205558 ~ 26205786 (+) True G71373
TU84556 lncRNA downstream 85754 26208320 ~ 26208544 (+) True G71374
TU84559 lncRNA downstream 95560 26218126 ~ 26223996 (+) False LOC117597118
TU84565 lncRNA downstream 102346 26224912 ~ 26226337 (+) True G71381
XM_026936904.2 mRNA upstream 77468 25973881 ~ 25979456 (+) True plk3
XM_026936905.2 mRNA upstream 77468 25973881 ~ 25979456 (+) False plk3
XM_026935822.2 mRNA upstream 92766 25954956 ~ 25964158 (+) False cacybp
XM_026935821.2 mRNA upstream 92766 25954979 ~ 25964158 (+) True cacybp
XM_026936184.2 mRNA upstream 103025 25951154 ~ 25953899 (+) True mrps14
XM_034303850.1 mRNA downstream 93498 26216064 ~ 26224038 (+) True LOC117597118
XM_026937232.2 mRNA downstream 165727 26288293 ~ 26292784 (+) False zgc:66427
XM_026935880.2 mRNA downstream 191777 26314343 ~ 26318878 (+) True si:ch211-284o19.8
XM_034303638.1 mRNA downstream 205361 26327927 ~ 26338595 (+) False mettl17
XM_026935878.2 mRNA downstream 205728 26328294 ~ 26338595 (+) True mettl17
TU84209 other upstream 155081 25898135 ~ 25901843 (+) False LOC113539772
XR_003404013.2 other upstream 175815 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1185661 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1947035 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2736581 23318504 ~ 23320343 (+) True G69509
TU84572 other downstream 106198 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 165724 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 165724 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 165726 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 165728 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile