RNA id: XM_034303967.1


Basic Information

Item Value
RNA id XM_034303967.1
length 1320
RNA type mRNA
GC content 0.46
exon number 7
gene id dcun1d1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29534634 ~ 29540015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGCGGGTGGAGTCGTACTGCGCATGACCGGAAGTAGATGACGGGCGAGAGGGGAAAAGCGGAAGAGGGAGTCTGGAAATCACAAACatgAACAAGCTGAAATCCTCGCAGAAGGATAAAGTTCGCCAGTTCATGATTTTCACGCAGTCGAACGAGAAAACAGCGCTGAATTGTTTGGCTCAGAATGACTGGAAACTAGAGGTGGCCACAGACAACTTCTTCCAGAATCCTGAGCTTTACATACAGAATCTGAAAGGACTGTTCGACAGGAAAAAGCTAGAGCAGCTCTACAATCGGTACAGAGATCCTCACGATGACAATAAGATCGGTATAGACGGCATTCAGCAGTTCTGTGACGATCTCGGTCTCGACCCAGCCAGTATAAGCGTCCTCCTAATAGCGTGGAAGTTTCGCGCCGCGACACAGTGCGAGTTCTCCAAGCAAGAATTCATGGACGGGATGACTGAACAAGgatgtgACAGCATAGAGAAGCTTAAAGCACAGTTGCCAAAAATGGAGCAGGAGTTAAAAGACCAAGGCAAATTTAAAGACTTCTATCAGTTTACTTTCAACTTTGCAAAGAATCCCGGACAGAAAGGCTTGGaTTTAGAAATGGCAATTGCCTACTGGAATTTAGTATTGGCAGGGCGTTTCAAATTCCTCGACCTGTGGAACAAATTTTTAGTGGAGCACCATAAGAGATCCATTCCCAAAGACACCTGGAACCTCTTGTTAGACTTCAGCACCATGATAACCGATGACATGTCCAACTACGACGAGGAAGGAGCGTGGCCAGTCCTTATCGACGATTTCGTCGAGTTCGCTCGGCCGTACATCGGGACAAAAAGCACGGCAGTCTAGGGGACTTCACCGTCCCGACCTCATGCACACCTCCACCTTGTGGAGGACTGAACTGAGATCTACATTGCCTTTTCCGACCCTCAGGATCAAGACGCTCATGTACAGCAAAGACATTTCAGAGACGCGTCTCCTCTTCGTCATCTAGCGGTggtttgggcttttttttttttttcttttctcctccccAATTTTTCAATTTGGATATGTGTGCCACGTCTGTGTCAACTGAATCTGGATCAAGCTCTAggacttcatcatgttttttttttttttttttttcttcttcttcttcttctcccacTCTCCCCACCTTCACCTGGGCAGGAGCAAAATCACAACAGAGACGCCATCTTCATCCCTAGCCAGGGCGTGGGTTGGGGAACCTCAACCTTAAATCTGAATTTTAGCACTCCACATTCGTTCCTGcgttgaatctttttttttttttttttttttc

Function

GO: NA

KEGG:

id description
K17822 DCUN1D1_2; DCN1-like protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86650 lncRNA upstream 7716 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 9798 29524298 ~ 29524836 (+) True G73088
TU86633 lncRNA upstream 10392 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA upstream 13612 29519108 ~ 29521022 (+) True G73069
TU86551 lncRNA upstream 233501 29299135 ~ 29301133 (+) True G73000
TU86653 lncRNA downstream 1080 29541095 ~ 29541435 (+) True G73092
TU86683 lncRNA downstream 89578 29629593 ~ 29629823 (+) True G73118
TU86686 lncRNA downstream 133499 29673514 ~ 29681141 (+) False zgc:153115
TU86717 lncRNA downstream 172455 29712470 ~ 29712682 (+) True G73151
TU86720 lncRNA downstream 178447 29718462 ~ 29719317 (+) True G73154
XM_034303405.1 mRNA upstream 20855 29500475 ~ 29513779 (+) True b3gnt5b
XM_026936995.2 mRNA upstream 20855 29500475 ~ 29513779 (+) False b3gnt5b
XM_026936996.2 mRNA upstream 20855 29500475 ~ 29513779 (+) False b3gnt5b
XM_026937112.2 mRNA upstream 38049 29481242 ~ 29496585 (+) True tbl1xr1b
XM_034303854.1 mRNA upstream 75339 29455551 ~ 29459295 (+) True LOC113540045
XM_026936004.2 mRNA downstream 1968 29541983 ~ 29553547 (+) True ccdc39
XM_034303451.1 mRNA downstream 14000 29554015 ~ 29559125 (+) True LOC113540073
XM_026936268.2 mRNA downstream 14121 29554136 ~ 29559125 (+) False LOC113540073
XM_026936269.2 mRNA downstream 14130 29554145 ~ 29559125 (+) False LOC113540073
XM_034303440.1 mRNA downstream 56451 29596466 ~ 29602830 (+) True LOC113540482
TU86406 other upstream 622530 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1913251 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1913957 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1976732 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1977986 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 79978 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1206116 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1206116 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1521715 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1811246 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile