RNA id: XM_034303978.1


Basic Information

Item Value
RNA id XM_034303978.1
length 3586
RNA type mRNA
GC content 0.52
exon number 23
gene id adam19a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14686254 ~ 14761565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtagcgggTGACGCGCTCTGCTCTGCGGGGTTACACGCCAGTCTCCAGTCACGCGTGTGCGTTAAACCTCTACTCGGCATGGCTTTCTCTCCTCTTGGAGCTCTACATTAGATCCATTTCTAGTTTTCTCTCACACCGGCGGggctgagagtgagagagagagagagagagagaggagagagagagagagagagagaggagacagaggagCAGTCCGCTACACGGAGACCGGAGCAGGCATGTATACCAAACACAGGCAGAAAAAGCGACTTGTCCTGTCGGCACAAAACGCGCGCGCTGTCTTGCCTCTTCTGCTCGTGAGCAGTTTATTAGGACCAGCGGACGCTAATCTCCGGGAAGGAGCATGGAAGGAGCGAGGACAGAAAGTGACGGCTCACTGGATCCCCCACACCACGGTACACAAAGACCCAGGAACGACTTCGCAGGATCAGTTTCCAGAGAGGGGAGAGATTCTTGTCTCAGCAGCGGACCTGGAGCTAATTCTAGAAGTGGAACGTaatcaggAACTTCTGGCTAAAGACTTCACTGAGACTCACTATGAAGACAGCCGGCCAGTTACCTATACTAACGGTCACAGTGATCATCATTGCTTCTATCATGGAAGTGTTAAGAACCATTCCTCTTCCTGGGTTGCTCTAAGCACATGCTCTGGAGTGAGGGGCCTCATTGTGCTGAACTCCAGTGACACTTACTACTTAGAGCCAGTAGAAGGGCAAGAGATTCTCCACCACGTCTTCTATCACACAGACGACCTGCCAATTAAAGGTGGTACATGTGGACACGGTCATGAAACTGGACATAAAGGCCTTCTCAGCGGTCTCCTTAAACCTTTGCATCAAAGGGTGAAACGAAATGCCTGGGGCACAACTAAGTACATGGAGCTTTATATAGTTGCTGACAACACACTGTACAGAAAGCAAAACAAGGACCTTGAAAAAACTAAACGGAGAATAATGGAAATTGCCAATTACGTCGATAAGttttACAGAGCTCTGAATATCCGGGTGCCTCTGATTGGTCTAGAGGTGTGGACAGACCGTGATCAGTGCATTATCAACGAAGAGCCCAACGCCACTCTGTGGTCCTTCCTGCAGTGGAGACAGAAGCTCAAGTCCCGCAAGAAACACGACAACGCACAACTTCTCACGGGGGTGATATTCAAGGGCACCACTATTGGCATGGCTCCCCTTGAAGGCATGTGCAGTCATGAAAATTCTGGCGGCATTAATGTGGATCATTCGGATTTGCCCATTGGGGCGGCTGCCACCATGGCTCATGAGATTGGCCATAACTTTGGCATGAGCCATGACCATGAAGGTTGCTGTGTGGAAGCCACAGCCGAGCAGGGAGGCTGCGTGATGGCAGCAGCTACGGGGCATCCGTTCCCTAAAGTCTTCAGCCGCTGTAGCAAGAAGGACCTGGATAACTACTTCCAGAAAGGAGGCGGGATGTGCCTGTTCAACATGCCCAACATGAAGGACCTGGTGGGGGGGAAGAGGTGCGGGAATGGCTTTGTAGAGGAAGGGGAGGAATGTGACTGCGGAGAACCTGAGGAATGTACGAATGACTGCTGCCATGCCAGTAACTGCACTCTGAAGCAGGACGCACAGTGTGCCCACGGCGTTTGCTGTGAAGGCTGCAAGCTGAAGCAGGCAGGTACGATGTGCCGTAGTGCAGCTGGCTCATGTGACCTCCCCGAGTACTGCACGGGTGGATCTCCCTACTGCCCATCTAACGTTTACCTCCTGGATGGATCCACATGCCAGTACGGCCACGCTTACTGCTATAACGGCATGTGCCTCACTCACGAGCAACAGTGCCTGCAGCTGTGGGGCTACgGTGCACGGCCTGCACATGATGCATGTTTCCAGGATGTCAATGCAGCAGGAAACGCTTTCGGAAACTGCGGCAAGGACGCACATGGCAATTATGTCAAGTGTGAGAAAAGTGATGCCAAATGTGGGAAGATCCAGTGCCACAGCGCCGCCAAAAAGCCAAAGGGCACTAACGCCGTGTCCATCGACACCACCATCCGCACAGATGGCATCGAGGTGAAATGCCGTGGCACATATGTGTACAGCACTCAGGACGGGCAGGGGGACCTTCCTGATCCTGGCCTCGTCATGACTGGCACCAAGTGTGGAGAGGGCAAGGTGTGCAAGGATCGTCGTTGTCAAAATGCTTCTTTCACCGAGCTGGAGGCCTGCATTGCCCGTTGCAATGGTCATGGGGTGTGTAACAGCAACAGTAACTGCCACTGTAACCGAGGCTGGGCGCCACCCTTTTGTGATAAACCAGGGCTGGGAGGCAGCGTGGACAGTGGACCGGTGCAGTATGACAGCCAGGTGGGGCTAGTTGTCGGCCTGCTCTTTGCTTTTCTGGTGTTGCTCCCTGCTGTTCTCATCGCCTTTTACTGCATCAAAATCAAGACCTCCTATTATCACAAATGGCTCTCACAGAGGGAGAAGAGCAAGGCTAACAACAGACATGAAAATTCCAAGGGGAAGAGTGGACACTTGAACCCAGCTTTCCATCTGAAGGTAGTGGGACCGTCCAACAAAAGCGCCAATCTTAAGCTACCTCATACAAGTAAGGAAGTGCTCCCTCTGCGACCAGGCCCCGCCTCCAATGGCACCCAGCCGGTCAACATTGTCCGTCCCCTCCGGCCCGCCCCCTCCCCCCACCTACGTGATGTCAAAGTGCCTCGGCCTCCTCCTCCCGTCAGCAAACCGCTGGAGGAAGCCAAGTGTAGTCCTACTGCTGCCAAACTCAGCCCTCCCAAGAAACCCCTGCCCCTCAACCCCACACGCAGCCCACTGATGGCATCAGAAGTCCAGCCGAAGCCTTCCCCCACACCCCCACAGAGGCCTCTCCCTGTGAGCCCCAGCCGCGGAGCCCAGGCCAAACCTTCCGGTGGAGCCGGGGGGTTGCTGGTGATGATGCCCTCTGCGGTGGGCCCCAAGCCTGTGGGCAAGGTCACCGCCATTCCTCCTCTCAGAGCACTCAGACCTGTTCCAGGACCCAAACCAAACACAGTCTCGCAGTCCCCTTTTCGAAAATGACCTTCACAGGATCAACTTTAAAGACAACAGCCAGCCTATTTGCACTATATAAAGGCCTTCATTGGGAGATTTGTAATTTTGTGGAAAAGCAGGGGACAAATGTACGGTGCTAAGGCCGGGACATTCTAGGCCTCGCTTATTTAAGCCTGAGTACAATCCAGCCCAGTGTCCGAGGGGACCGGATTTTGCATGGATCAGAATGCAGATTTAGACAAGATGCTTCGTATGGGGCATCACATTGCCAaaaccttgattttttttaactttacagtTTTCTTGTATgaagtgttgttgttgtgttatgtCATTGTcgtgtttacatttttttattactattattaattgTGTGTTAATTTGCCAAAGAATTTATGTTTGAATGTCAATCTAATGTGTCCTTTGCTGTAcgtatttttgcatttgttataTAAAATGCACCATtataggtttttattaaaaactgtgTTGTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76581 lncRNA upstream 5441 14680206 ~ 14680813 (+) True G64668
TU76370 lncRNA upstream 389782 14296270 ~ 14296472 (+) True G64462
TU76367 lncRNA upstream 390993 14295002 ~ 14295261 (+) True G64459
TU76204 lncRNA upstream 629367 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 643840 14041968 ~ 14042414 (+) True G64095
TU76586 lncRNA downstream 770 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 215761 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA downstream 215761 14977326 ~ 15011493 (+) False LOC117597182
TU76906 lncRNA downstream 439744 15201309 ~ 15201528 (+) True G64963
XR_004578089.1 lncRNA downstream 744727 15506292 ~ 15556924 (+) True LOC117597190
XM_034304075.1 mRNA upstream 39014 14638490 ~ 14647240 (+) True zgc:194930
XM_026936434.2 mRNA upstream 39015 14632060 ~ 14647239 (+) False zgc:194930
XM_034304076.1 mRNA upstream 39015 14632731 ~ 14647239 (+) False zgc:194930
XM_026936433.2 mRNA upstream 63730 14576397 ~ 14622524 (+) True LOC113540153
XM_026936436.2 mRNA upstream 306703 14356048 ~ 14379551 (+) True LOC113540157
XM_026937085.2 mRNA downstream 62537 14824102 ~ 14829911 (+) True paqr9
XM_026936678.2 mRNA downstream 127735 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026936099.2 mRNA downstream 1142790 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA downstream 1147943 15909508 ~ 15916921 (+) True cckar
XM_026936548.2 mRNA downstream 1230610 15992175 ~ 16000945 (+) True plaa
XR_004578093.1 other upstream 27318 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 416914 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 966800 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 1123988 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 1211217 13470769 ~ 13475037 (+) False LOC113539889
XR_003403994.2 other downstream 1261630 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 1548648 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 1606391 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 1998954 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 1999184 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile