RNA id: XM_034303979.1


Basic Information

Item Value
RNA id XM_034303979.1
length 1930
RNA type mRNA
GC content 0.48
exon number 11
gene id eif4a2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29519091 ~ 29530681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAAGGTGCACGCGGGCTCCGGAATGAAATAGTTCCGGTTAAATAAAACTCGCCTGAGATTCACGCGCTCTTCCTTTCCGAGTGGATGCCGAAGTCGCGAGCGGATCATGTCTAGCGGTTCTGCTGATTATCACAGCTCTAGAGATCGAGATCATGGAGGGCCAGAAGGAATGGAGCCTGATGGCGTCATCGAGAGCAACTGGAATGAGATCACGGACAACTTTGATGACATGAACCTGAAGGAGACGCTCCTTCGAGGAATCTATGCGTATGGTTTTGAGAAGCCGTCAGCTATTCAGCAGCGAGCGATTATTCCTtgcattaaagGATACGATGTCATTGCTCAAGCCCAGTCAGGCACGGGCAAAACAGCCACGTTTGCCATCTCCATCCTGCAGCAGTTGGAGATTGAGCAGAAAGAGACCCAGGCGCTGGTCCTGGCGCCGACCCGTGAGCTTGCTCAGCAGATTCAGAAGGTCATCTTGGCCTTGGGCGACTACATGGGTGCGTCGTGCCACGCCTGTATCGGAGGCACCAACGTGCGCAACGAGATGCAGAAGCTTCAAGCGGAAGCGCCGCACATCGTCGTGGGGACTCCGGGGCGCGTGTTCGACATGCTGAACAGGAGGTTTCTCTCTCCTAAATGGATCAAGATGTTTGTCCTGGATGAAGCAGATGAAATGCTGAGTCGTGGTTTCAAGGATCAGATCTATGAAATCTTCCAGAAATTGAGCACAAACATTCAGGTGGTGCTCCTTTCGGCCACCATGCCCGCTGAGGTCTTGGACGTGACCACGAAGTTCATGCGTGAGCCGGTGCGCATCCTGGTGAAGAAAGAGGAGCTCACCCTGGAGGGTATCAAGCAGTTCTACATCAATGTAGAAAGAGAGGAATGGAAATTGGACACGCTCTGCGATCTGTACGAGACTCTGACGATTACCCAGGCCGTCATTTTCCTGAATACGAGGAGAAAGGTGGACTGGCTGACCGAGAAAATGCACGCGAGAGACTTCACCGTGTCTGCTCTGCATGGAGACATGGATCAGAAGGAGCGTGATATCATTATGAGAGAGTTTAGGTCTGGATCGAGCCGAGTGCTGATTACTACAGATCTGTTGGCTCGTGGTATCGATGTGCAACAAGTTTCCCTTGTTATCAACTACGACCTTCCGACGAACCGAGAGAACTACATCCATAGAATTGGCCGTGGAGGTCGTTTTGGCAGAAAAGGCGTCGCCATTAACTTCGTTACTGAAGAGGACAAACGGATCCTTCGAGACATTGAGACGTTTTACAACACGACCGTGGAGGAGATGCCGATGAACGTGGCCGATCTGATTTAAACCGCcggagatttatttttaatgcaggGATAGCTACAGAATAATCACTTGCATTTTTTGCGCTTATTTTAttggaagaataaaaaaagcctGTTTCTCCTCAATGCTGGCTGTGGATCAGACGTGCGAATTCGATACGATACGTGACGTGACTTTCCTGCGCGGACGGCTGTGGGCGTCGTATCGGTGTCTCCCGGTAGCGGCGTTTGCAGAAAAATGGGTTCTTTAAATGTGTTCTTTATCAGGTATTTTCTCCCTAGTATGTTCAAAATATCCGTGTTAGATGTTCTTCATCGTTTAGTAATTTACTTGTGGACTAAAAGATACAAGTGCTGCATCAAGTCTGCCAATTATGTTATGCTAACATACGTGTGCAGTTTAACTTGGTTCACTCACTCCTTCCCTGTCAGTAAACGcaaaggcacttttttttttttttggattgtaTTAATTTAATTGTATATTGTTTTATCAAGTACTTCTTTGTGTGAAGTCCTCTTCAAAAGTGGGTCTTAACATTTAAAGGATTTAAATGTTTCATGTAGTGTTTGGCTCATTTGACAATAAAGAGGATGGTGATACTCTC

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86901 lncRNA downstream 198757 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 300933 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 304040 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 329751 29188158 ~ 29189340 (-) True G73249
TU87006 lncRNA upstream 9414 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 76920 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 140506 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 180405 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 182212 29712893 ~ 29713446 (-) True G73458
XM_034303512.1 mRNA downstream 53071 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA downstream 54293 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA downstream 54380 29461041 ~ 29464711 (-) False kcnmb2
XM_026937224.2 mRNA downstream 66298 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303445.1 mRNA downstream 147565 29359500 ~ 29371526 (-) True pcolce2a
XM_026937263.2 mRNA upstream 33540 29564221 ~ 29575414 (-) True LOC113540665
XM_026937014.2 mRNA upstream 46017 29576698 ~ 29592827 (-) True ripk2
XM_026935978.2 mRNA upstream 99289 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 99289 29629970 ~ 29666855 (-) True LOC113539879
XM_026936973.2 mRNA upstream 150563 29681244 ~ 29692555 (-) True si:ch211-13f8.2
TU86878 other downstream 366710 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 634126 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 634126 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 636927 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 866666 28648324 ~ 28652425 (-) False LOC113540437
XR_003404065.2 other upstream 33921 29564602 ~ 29575727 (-) False LOC113540665
XR_003403975.2 other upstream 193907 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 488825 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1210988 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1242782 30773463 ~ 30775819 (-) True ccl20l

Expression Profile