RNA id: XM_034303984.1


Basic Information

Item Value
RNA id XM_034303984.1
length 1913
RNA type mRNA
GC content 0.41
exon number 4
gene id pfn2l
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28104505 ~ 28111007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGAGGGATCTCGAGCACGGACTACACCCAAGGCGCTGTCTCGATTCACATCGGCTTTTCTTCCCTGCCCCCCCCAAAAAGCAGACCTCGGCAGCACGCAGCTAAGCGCTTTTTGGAGAGGCGAGCCTCGACTCGGcaaacatgtcttggcAAAGCTACGTGGATAACCTGATGGCCGACGGCAGCTGCCAGGATGCCGCCATTGTCGGTTACACGGACGCCAAATACGTTTGGGCATCTTCAGAAGGGGGCACTTTTAGCGGTATAACgGCCGATGAAATCGATGTCATAGTCGGCAAGGACCGGGAGGCCTTCTTCACCAACGGGCTGACCCTAGGGAAAAAGAAGTGCTCTGTGATCAGAGACAGCCTGCCACTCGATGGTGACTGGACTATGGATATCAGGACGAAGAGTCAAGGTGGAGAGCCGACGTACAACGTTTCCGTAGGCAGAGCTGGCAAAGTATTGGTTTTAGTCATGGGAAAGGAAGGTACCCACGGAGGACAGCTCAACAAGAAAGCATTTACCATGGCTGAATACCTGAGGAGAGCTGGATACTGAAGCAGCCCcctttccatccatccacacagCAGCTCACTGTAACATCCCATCATCCCTTTCTCCCTccttggtttttcttttttcttttcttttttcctccttcacaGCACTACAGATACTTAGTGGATGCATTGTCTATCCAGCCCCTTAATTCtcaactgtgttttttttttttttttttttttaaaatgtacacccttacttcctctcttccttctaTTTAGCATACCTATCCCATTCCCATTTTCCTCATCCTTATAGTGCCACAAAACAAGCATGTTCATTTTATGAAGgcttaaaacaaaaacacagtactgtacataaagCATTTAAGACAATTGGGCTTTTCAGATTTGCATAAACGAATCGTCACTGTCCAGTTTTCCTGAGGCACTTATCTAGTGGTCCATCGATGCCTCTCGAGTGCTTTGAGCCTTGCTGAGCTGTCGGTCTTCCCTAGTGATTTTTTCTTTCCAGCATGGCCAGGAGGGTTTAAAAAGTGCATGCATATCTCTTTTAGCTCAATATCATCAAATACCTAACTACCATACACTACCAGTgtcctcccaaaaaaaaaagtaataaattgaACCACACTACATAATTCTTGCCCTTATACTTGTAACCAGTTTTATTCAAAATACAACATCCAATGCTTTTACTGTTGTATCTGGATGTGGTGTTGTGAGTCTTCGATGtaatgttggattttttttttttttttttcttttgaatgtGATGGCAGATCAGCATTTACAACGTCTaggtttaaaacaaaaatcgCTTCTGGACTCTAAGGACATTCCACCGCTAATATAGCCACTTAGCAACTTATTTACCAGCTAGTGATtttgatttattgtaatttttttaaagcactgcCCTTCCGATGTAACTCTGGTTTGGTGTCCATTCatattatagatattattttttttctccagtaggaccaattttttttctgcattttggaGGATTAACAGATTACTGAAGGATCGACTGCTAGCTTCATCTGTTTGTAGAACATGAAATTGAACATTTCAAATACACAGTATAACACTAACCTCTTGACTTCACTAGTAATGGTATCCATGACTTGGGGATGGATTACAAAGCTCTAATGGTAACtacctgattattattattattattattatttttttctttctcacaatGAATGTTTTGAATAGATGAAATGGCAGTCTTATTGTTGACTTTAAATCCTTTAACCCCCATTTTGTCTGTTAATCCTGTCAGTTTTCAAACATCAAGTCATTTGTGCTTTATTCAACTGCGATATATCAACTTGTCATAGCACGgtacaaatatttcattaaataggcaaaaaaaa

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85626 lncRNA upstream 92049 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 545081 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 545398 27556085 ~ 27559110 (+) False LOC113540592
TU85674 lncRNA downstream 3444 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 191844 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 205397 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 357941 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 463915 28574922 ~ 28578950 (+) True G72378
XM_034303328.1 mRNA upstream 35242 28065067 ~ 28069266 (+) False LOC113539840
XM_026935908.2 mRNA upstream 35242 28065068 ~ 28069266 (+) True LOC113539840
XM_034303329.1 mRNA upstream 35242 28065068 ~ 28069266 (+) False LOC113539840
XM_026935909.2 mRNA upstream 35242 28065068 ~ 28069266 (+) False LOC113539840
XM_026937080.2 mRNA upstream 50189 28047199 ~ 28054319 (+) True nmur1b
XM_034303981.1 mRNA downstream 1842 28112849 ~ 28152505 (+) True zbtb41
XM_034303982.1 mRNA downstream 28710 28139717 ~ 28152505 (+) False zbtb41
XM_026936391.2 mRNA downstream 28711 28139718 ~ 28152505 (+) False zbtb41
XM_026936375.2 mRNA downstream 142021 28253028 ~ 28260254 (+) True LOC113540125
XM_026937128.2 mRNA downstream 205397 28316404 ~ 28338173 (+) True htr5ab
trnat-ugu_8 other upstream 483125 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 483831 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 546606 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 547860 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 615183 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 763349 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1508986 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2635124 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2635124 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2950723 31061730 ~ 31097888 (+) False spsb4a

Expression Profile