RNA id: XM_034303993.1


Basic Information

Item Value
RNA id XM_034303993.1
length 2103
RNA type mRNA
GC content 0.54
exon number 12
gene id ap2m1a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27534676 ~ 27546129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACTTCCAGGCCGGAGGAGGGCCGGAGGGAGGCAGGGAGTCATCCTGAGGTAAAAGATCTCTGATGTCAACGCTAATCCTTTAgcaaccccccaaaaaaagacGGAAATCGGGTTGTTCCGCGCTTACTCCAGCGGATCCTACTGAGGAGTGAGAATCCGCCATGGCATGTGAGGCGTGAGGAGCAGCCACCATGATTGGAGGACTGTTCATCTACAACCACAAGGGGGAGGTACTGATCTCCCGCGTGTACCGCGATGACATAGGGAGGAATGCGGTGGATGCGTTCCGTGTGAACGTGATCCACGCCCGCCAGCAGGTGCGCTCGCCCGTCACCAACATCGCACGCACCAGCTTCTTCCACGTGAAGCGCTCCAACATCTGGCTGGCAGCTGTCACCAAGCAGAACGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTGATGGCGGCCTACTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTCGTCCTCATCTACGAGCTCCTGGACgAGATTCTGGATTTTGGATATCCTCAGAACTCGGAGACCGGAGCACTGAAGACGTTTATTACGCAGCAGGGGATTAAGGGTCAGCATCAGACGAAGGAGGAGCAGTCTCAGATCACCAGCCAGGTGACGGGGCAGATCGGCTGGCGTCGCGAGGGCATTAAATACCGCCGCAACGAGCTTTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTGATGTCTCCTCAGGGTCAGGTGCTGAGCGCGCACGTGTCGGGCCGTGTGGTGATGAAGAGCTACCTGAGCGGGATGCCTGAGTGCAAGTTCGGCATGAACGACAAGATCGTCATCGACAAGCAGGGGAAAGCCGGAGCGGGCGACGACACCGGGAAGAGCAGCGGGAAGCAGTCCATCGCCATCGACGACTGCACCTTCCACCAGTGTGTGCGTCTCAGCAAGTTCGACTCGGAGCGCAGCATCAGCTTCATCCCTCCAGACGGAGAGTACGAGCTCATGAGGTATCGCACCACTAAAGACATCATCCTGCCGTTCCGCGTCATTCCGCTGGTCCGCGAGGTCGGACGCACCAAGCTGGAGGTAAAAGTCGTCATCAAATCCAACTTCAAACCCTCCTTACTGGCTCAGAAGATTGAGGTGCGCATCCCCACCCCTCTGAACACGAGCGGCGTGCAGGTGATCTGCATGAAGGGCAAAGCCAAGTACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATTAAGCGCATGGCTGGAATGAAGGAGTCTCAGATCAGCGCTGAGATCGAGCTGCTGCCCACCAACGATAAGAAGAAGTGGGCTCGTCCTCCCATTTCAATGAACTTTGAGGTGCCGTTCGCTCCGTCCGGCCTGAAGGTTCGCTACCTGAAGGTGTTCGAGTCCAAGCTGAACTACAGCGACCACGACGTGATCAAATGGGTTCGCTACATCGGCCGCAGTGGCATCTACGAGACGCGCTGCTGACCGCGCGAGCAGCCGACTCCCGTCCCACACCTTCCCTCTGAGATAGGTGGatgaattaaacaaaacaaacagtagAGAATTATGCAAATGTGAACCGTGACCTGTGTGTATGAACAGTtatagcagagagagagagagagagagagagagagagagagagagagagagagagagagagtcgtaGTGTGAGAACGTCACAGCACTGCGCAGTGTTCAGGGTTTATTACAGCAGATTGTGGGATGAATCAGGGTGTGTCCCAAATGCTAGTTAACATCCTAGATACAAAGCAATTCTTCTGGTTATCATGCTGGTTACAGACTacgaagggggaaaaaaaaaactccttacTGACTAGTTTGTTAGAATGAATTGTCAGTGACGTTTGGGACACGACCCCGCTGCACGAGCGGACTTCCTCGCCGTCACACGGGCGTTACGGTGCGTGCGGCGAAGGAGGAAGTGGTGCAGTGCTGTGAGGAtcgatgtggtgtgatgtgtcctgcagtgttcgctctctctctcagtgtctgaTCTCGCTGTCTGTAACAGTAAacgtatatataaatatattaaaaaaaaactggggggaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K11826 AP2M1; AP-2 complex subunit mu-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404004.2 lncRNA upstream 46965 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA upstream 46965 27483831 ~ 27487711 (+) False LOC113540179
TU85362 lncRNA upstream 74479 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 105454 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 128278 27405579 ~ 27406398 (+) False sgip1b
TU85494 lncRNA downstream 6998 27553127 ~ 27555706 (+) True G72118
XR_003404048.2 lncRNA downstream 9956 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA downstream 10075 27556204 ~ 27559102 (+) False LOC113540592
TU85492 lncRNA downstream 10075 27556204 ~ 27559427 (+) True LOC113540592
TU85493 lncRNA downstream 10075 27556204 ~ 27559013 (+) False LOC113540592
XM_026936183.2 mRNA upstream 17472 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935807.2 mRNA upstream 26477 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA upstream 26477 27495848 ~ 27508199 (+) False abi1b
XM_026936474.2 mRNA upstream 57003 27468048 ~ 27477673 (+) False zgc:55943
XM_034304070.1 mRNA downstream 16020 27562149 ~ 27582022 (+) True dvl3a
XM_026936880.2 mRNA downstream 82319 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 102685 27648814 ~ 27698656 (+) True arhgap21b
XM_034303531.1 mRNA downstream 102685 27648814 ~ 27698656 (+) False arhgap21b
XM_034303532.1 mRNA downstream 102685 27648814 ~ 27698656 (+) False arhgap21b
trnat-ugu_5 other upstream 45351 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 421422 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 870594 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1158897 26353189 ~ 26375779 (+) True LOC117597079
XR_003404069.1 other downstream 10388 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 11636 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 74476 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 75182 27621311 ~ 27621383 (+) True trnat-ugu_8
TU86406 other downstream 1328227 28874356 ~ 28912104 (+) True G72873

Expression Profile