RNA id: XM_034303996.1


Basic Information

Item Value
RNA id XM_034303996.1
length 2452
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC113547251
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5931330 ~ 5949680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctttgcagtgtgtgttagtggtagTGTTCATCCTGAGTTTGAGCTCCTCACTGCTCCTTCAGCATGGACCACTCAGCTGCACTGTggacatttctgatttttagcATAACTCTCCTCAGCTTGGGGGTCAGGGCTCTGCCAACAAGCAAAGTAACAGAGTATGATGTAGATGGTGGAAAAGAGGATCTATTTGAGGTCAATCAAGCGGCTGGTCTTGAGCTCTTCGAGGGAGATATTTTATATGATGAGAAACAAGGGAGGAACTCCATAATTGGGGATGAATACTTATGGCCCACCACTGTGCCATACTATTTGGAGGATGATTTGGATATTAATGCTAAAGGCGTTATAATGAAGGCGTTTGAACAGTATCGCCTGAAGACCTGCATTGACTACAAACCCTGGAGCGGAGAAGAGAACTACATCTCTGTGTTTCAAGGCAACGGGTGTTACTCCTATGTGGGGAACCGACACGTGGGAAAGCAGAGCTTATCCATCGGTGCAGGATGCGACCAAACCGCCACCATCGAACACGAGTTCCTTCATGCCCTGGGGTTCTGGCACGAGCAGTCACGTGCCGATCGTGACGACTACGTCACCATCATGTGGGATCGCATCCAGGGAGGCATGGAGCACAATTTCAATAAATATGATGACACGACGTCCAGCTCCCTGAACGTACCCTATGACTATGATTCCATGATGCACTACAGCAAGAACGCCTTCAGTAAAGGCACCGAGCCCACCATCGTCACCAAGATTCCCGCCTTCAGCGACATCATCGGCCAGAGCTTGGAGTTCAGCGACAGCGACCTGCTCAAGCTGAACAGGCTTTATAATTGCACAAGAGCCACAACTTTCCTGGACACCTGTGACTTTGAGCTGGAAAATATATGTGGGATGATCCAAGGTCAGGGTGACAAAGCAGACTGGGAACATGTCACCAAGGCAACTGGTGGACCCGACACAGACTATTCTAACATGGGACGctgtactgGCACAGGCTACTTCATGCACTTCAGCACCATCAGTGGCACCGAAGGGGACACTGCCCTGTTAGAAAGCAGGCTGCTCTACCCTAACCGCAACTATCAGTGTCTACAGTTCTTCTACTATCACAGTGGAAACCCCAATGATAAGCTGGAGATCTGGGTGAGAGAATACAATGAAATCAACCCTAGCGGAACACTACGCATGATCGAGACAATAACTGgaCCGCCTGAGCCGTTATGGCAGCTACACCATGTTAACCTAGACGTCTCCACAAAGTTCCGCGTGGTATTTAAAGGTACAAAGGGTGCTGGAAGCTCCACAGGTGGGCTCTCTTTGGACGACATCAATCTTTCTGAGACTGCCTGCCCAGAACATGTGTGGCGGATCAAGAACTTCAAAAGTATTATGGAAAACACACCCAGGGGCACTGCCATACACAGCCCACGCTTTCAGTCAAAGTATGGCTACACCTTCCAGATGAGCTTGTATCCCAGTGGCACTACGACCTACCCAGAGTATTTGGGAGCCTTTGCCCGTCTGACATCTGGTGATGACATGATTGACAGTAATCTCACTTGGCCCTGCCCATGGATGCAGATTACTATGATGCTAATGGATCAGAATGCAGACATCCGTAAACGCATGTCCAACCAGAGAAGTATCACAACTGACCCCAATGTGAAATTACCAGGATCTACAATGTATTTCTGGGACAACCCACGAAAAGTGGGAGCGCAAGTAACAGATGTGGATGGGACTAAATACTTCAGAGGATCAGGATATGGAACATATGGATACCTGACTCAGGCCAGAGCACTCAGCAGAGACTTTATCAAGGGTGGAGATGCCATCTTCCTCCTCAGCATGGAAGATATATCAAACATGCTTCTTTCTCAGCCCCTCCCTTCGACAACCGTCCCCAACACAACCTTACCCACGACAACCTTACCCACGACAACCTTACCCACGACAACCGTCCCCACGACAACCGTCCCCACGACAACCGTCCGCACGATCCCTACTCATGATCTATGTGCCTCggtaaaatgtgaaaatgatggCGTGTGTGTTATTGACAATGGTGTAAAAGCAGCCTGCAGGTGTGCCGTAGGTAACGACTGGTGGTACCACGGGGACAGGTGTCAGTTCAAGAGTTCGAACCAGGATGGTGTGGTGATGGCGGTCGTGTCCTCGGTTGTGGTCTTTGCCgtcatggtggtggtgatggtggtggtgacgGTAGTGAGTGTGGAGTGTCTGAAGAATAAGTAtaagaagaaaatgaatgacATGGGGGCCGGCATTACCACACGAAATGTCCATGCAAAGTAACAGCACCCTGAATCATTTAATCAGTAGCGGTAGTGGCATTATACACTTATGTATGAATATAACAAGtatattttcatgtcatttcaatctcaagaaaaataaaatgattttcattCGTTTCTGAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08606 MEP1B; meprin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71164 lncRNA downstream 32315 5897379 ~ 5899015 (-) True G60151
TU71166 lncRNA downstream 32315 5898093 ~ 5899015 (-) False G60151
TU71093 lncRNA downstream 79984 5785295 ~ 5851346 (-) True G60092
TU71143 lncRNA downstream 90856 5838134 ~ 5840474 (-) True G60136
TU70978 lncRNA downstream 204896 5725978 ~ 5726434 (-) True G59992
TU71204 lncRNA upstream 20215 5969895 ~ 5972613 (-) True G60181
TU71206 lncRNA upstream 20215 5969895 ~ 5972613 (-) False G60181
TU71348 lncRNA upstream 430018 6379698 ~ 6379897 (-) True G60311
TU71365 lncRNA upstream 440023 6389703 ~ 6390077 (-) True G60328
TU71370 lncRNA upstream 445185 6394865 ~ 6395071 (-) True G60333
XM_034304148.1 mRNA downstream 13370 5904196 ~ 5917960 (-) True LOC113547287
XM_034304149.1 mRNA downstream 13370 5904333 ~ 5917960 (-) False LOC113547287
XM_034304132.1 mRNA downstream 193108 5726590 ~ 5738222 (-) False LOC113547299
XM_026947569.2 mRNA downstream 193108 5726590 ~ 5738222 (-) True LOC113547299
XM_026947581.2 mRNA downstream 237095 5617863 ~ 5694235 (-) True adcy1b
XM_026947543.2 mRNA upstream 6447 5956127 ~ 5967304 (-) True LOC113547282
XM_026947470.2 mRNA upstream 22944 5972624 ~ 5986215 (-) True ripk1l
XM_034303940.1 mRNA upstream 568783 6518463 ~ 6560326 (-) False mylk4a
XM_034303939.1 mRNA upstream 568783 6518463 ~ 6560326 (-) False mylk4a
XM_034303938.1 mRNA upstream 568783 6518463 ~ 6531220 (-) False mylk4a
TU71182 other downstream 1131 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 445533 5478542 ~ 5485797 (-) False cldn1
trnar-ucg_1 other downstream 1121466 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 1283450 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1675046 4238397 ~ 4256284 (-) False LOC113537670
trnak-cuu_3 other upstream 231207 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 494064 6443744 ~ 6443815 (-) True trnae-cuc_12
TU71817 other upstream 932789 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 2625826 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 3033554 8983234 ~ 8984453 (-) True G61478

Expression Profile