RNA id: XM_034304007.1


Basic Information

Item Value
RNA id XM_034304007.1
length 2324
RNA type mRNA
GC content 0.54
exon number 13
gene id dcaf8
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28632754 ~ 28642395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagtagttaCGAAGCAGTTCagtcaacataaaaaaaaccgaaaaaaaagaaaaaaccaacAACACAGCTGCAGCCGGAGGTTTAAAGCCGCTTTCTGCTCgaggtttatttaatattttgcagatGTCTCGCAAATCTGTTTTTCCGCTTTCAGTCCGGCGCGTCTGAAGTGCACGAGTCTGCTGTGGACGAGTTTTAAGAAGTGCGGAGGAATTTTTTTTCAGGCCTGCTCAAAGGCTCCCTTCGTCAGGAGGAAGGACTCGGAGGCAGCATGGCAGACGCTCAAGGGCAGTCCAGCGTTCCAAACGGTGGCGCTGATGATCCAGAACCAGAAGAGGGAAGAAACAGTGAAGGAGACTCGACTTCACCTACAGAGGATCAAATACAACCTGATTCAGAATTGAGCCCACAGGAGGATCAGCCAGctgcagaagaggaagaagaggaagaggaagaggacacAGACAGCATGGATGGCAGCCTTTTGTACTCTTTTGTGGAGGAGGGAAAGGAGCAAGACAGCGACGGGAGCGGGCGAAGAGAGCGAGCGAAAAAGGATGAGAGCAGGAGAGCAGGCCGGAAGCGGAACCGACCCACGTCACGCCACTCCTCCAGCtccgacgatgatgatgatgatgacgatgacgacgacgatgatgatgttgaggaagatgaagagaatggaaaggaagaagaggaagacatGGAGGCGTGGCTAGGGGCAGAGATAAAGGAAATGGGCGGGCCTAAGTGGCGCGCCGTGCCGTCTCTGCGGGCGCGGGAGATCGGGAAGAACTCGGCGCAGTTTGTGCGGCGCGTGTGCGGCTCTCGAGGCCTGGTGCAGCGTTTGGAGCTGCAGGCTCGGCTGGAGCGGCACAGCGGCTGCGTCAACACACTCCACTTTAACCCCTCCGGGACACGCCTCGCCTCGGGCAGCGATGACCTGCGCGTGGTCATCTGGGACTGGGCGAGACGCCGCGCCGAGCTGGAGTTCGACAGCGGGCACAAGAGCAACGTCTTTCAGGCGAAGTTTCTCCCTCACAGTGGAGACTCCACACTGGCCATGTGTGCTCGGGATGGGCAGGTCCGCATAGCCGAGCTGTCCGCCACGCAGCgctgcaaaaacacaaaacgaGTGGCTCAGCACAAAGGAGCCGCACACAAGctggCTCTGGAGCCGGATTCGCCCTGCTGTTTCCTCTCCACTGGAGAAGATGCCGTTGTGTATAGCATTGACCTGCGTATCGATCGACCCGCCAACAAACTAGTGGTGGTGAAGGAAAGTGACAAGAAGGTGGGTTTGTACACCATCTATGTGAATCCGGCCAACACGCATCACTTCGCAGTTGGAGGAAGAGATCAGTACTTAAGAATCTACGATCAGAGGAAGATCGATGAAAACGACAACAATGGTGTTCTGAAGAAGTTCTGTCCATCTCACCTGGTGTCCAGCGAATCCAAAACGAACATCACCTGCTTAGTGTACAGCCATGACggctcagAGCTGCTTGCAAGTTATAACGACGAAGACATTTACCTGTTCGACTCGAGCCATAGCGACGGTGCCGATTATCGCCGGAGATACAAAGGACACCGCAACAACGCTACagtgaaGGGCGTGAACTTCTACGGGCCTTGCAGCGAGTTTGTAGTGAGCGGAAGCGACTGTGGACACATTTACCTGTGGGACAAACACTCGGCCCGTGTGGTGCAGTTCATGGAGGGCGACAGAGGCGGAGTGGTGAATTGTTTAGAGCCTCACCCTCACCTGCCAGGTCTGGCCACCAGCGGCTTGGATCACGATGTTAAACTCTGGGCTCCAACTGCAGAGAGCCCCACCAACCTGAAAGGCCTCAAGGAGGTGATGAAGAAGAATAAGCGTGAGCGTGACGAGGACAGCGCTCGGCACGGTGAACAGTACGACACACAGCTCCTCTGGTTCCTGATGAGGCACATGAGGAACCGCAGACCTCTTAGAactcATAGCAGACATGGAGAAGGCGGAGACGGAGACACAGACACGGAGTCCTGGAGCTCTCCAGAATCTTCCGATGATGAGGACGGAGGCCCTGACCATGTCCAATGCATGTCCTcctgagccacacacacacacacacacacacacacacacacacaccccctcacacTGCCCATGACCATGTATTTAAGCACATACACAGTAGTTATGCACTGATACACACTGCGAGTACAACgccagcaaaacacacacacacacacacacacacacacacatatagctTTATACAcaaagagtgagggagagatgaATGgaatgtagacacacacacacacacacacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86223 lncRNA downstream 160983 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 249294 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 253622 28365657 ~ 28379132 (-) True G72720
TU86171 lncRNA downstream 432945 28197991 ~ 28199809 (-) False LOC117597043
TU86306 lncRNA upstream 24929 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 70640 28713034 ~ 28717955 (-) True LOC117597077
TU86345 lncRNA upstream 140529 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 145229 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 189990 28832384 ~ 28833720 (-) True G72893
XM_026936572.2 mRNA downstream 4611 28619816 ~ 28628143 (-) False LOC113540232
XM_026936569.2 mRNA downstream 4611 28619816 ~ 28628143 (-) True LOC113540232
XM_026936570.2 mRNA downstream 4681 28619816 ~ 28628073 (-) False LOC113540232
XM_026936574.2 mRNA downstream 13642 28611191 ~ 28619112 (-) True LOC113540234
XM_034303284.1 mRNA downstream 27511 28574908 ~ 28605243 (-) True lmbr1
XM_026936934.2 mRNA upstream 5930 28648324 ~ 28652425 (-) True LOC113540437
XM_034304106.1 mRNA upstream 26585 28668979 ~ 28680704 (-) True scp2a
XM_026937186.2 mRNA upstream 40078 28682472 ~ 28685576 (-) True czib
XM_026937185.2 mRNA upstream 44162 28686556 ~ 28690012 (-) True uck2b
XM_026936878.2 mRNA upstream 57275 28699669 ~ 28706523 (-) True zte38
trnas-uga_2 other downstream 395949 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 396487 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 590969 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1007946 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 1011626 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578096.1 other upstream 5930 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 231184 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 231186 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 239933 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 506244 29148638 ~ 29152381 (-) False usp33

Expression Profile