RNA id: XM_034304009.1


Basic Information

Item Value
RNA id XM_034304009.1
length 1984
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113547216
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4605172 ~ 4609562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAAAACGAAAACGTTTCAGAAAGTAACGCAAAGCCTCTAAAACAGTTTTTGCTCAATGTGAAGCTTCTTCAGTGTTTCTTTAAGGAACTAAAGCCACAGCAGGTAAATTATAGGGAGCAGAAAacggggggaaaaaaggagagaaagttGAAGCAGACATGGCCTCCTCCAGCAGTCTCTTATCTGAAGACCAGCTCCAGTGCTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTAAGATGTGTCTGAAAAAGTgctgggacaccagtccatacTGCCAGTGTCCAGTGTGTAAGGAGGATTTCCCCAAAAGACCTGAGCTTCGTGTGAATACGTTCATCTCTGGTCTGGCTGCTCAGTTTAAGAAGTCAGTTCAGGTGAAATCCAGCAGCGTTGTAGATCCGCTTCTCTCCAATACTAAAAAGGTTCTGTGTGACTCCTGCACTGAGGAAAAGCTGGAGGCTCTAAGGTCCTGTCTGCATTGTGGGGTTTCTCTCTGTAGCACTCATCTGATGCCTCATAAAACTACAACCAAATACAAAAAGCACAAACTGATTGACCCtgtggagaacctggaggactACATCTGTCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGATgacaagatgtgtgtgtgtcagttctgCACTGAGACAGACCACAAAACTCACAAAACTGTTCCTGTAGAAGAGGAAGGTCAATTAAAGAAGAGTCACTTGGGGAAGAAACAGGCGAATTTTCAAAAGATGATTCAAGACCGACTGAGGAAGATTCAGGAACTCAAACAATCTGTAGAACTCAATAATAAAAACATAGAGAAGGAGAAAGCAGAAAGCATGGAGGTGTTGAGTGCTCTGATGCGCTGCATTGAGAGGAGCCAGGCTGAGCTGCTTAAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCCGAAGAGTTCATTAAAGAGCTGGAGAAGGAAATCACTGAGCTAAAGAGGAGAAacactgagctggagcagctctcacacactgaggATCATCTCCACCTCCTACAGATTTACCCGTCACTGTGCAGCCCTCCACACACCCAGGACTGGACCGATGTCACAATTACCTCTCATCTGAGTTTGGAGACTCTGAGAAGAAATCTGTCTCAGCTTCAGGAGACTTTCAATAAGAAAATGAAGGAGCTTCCTGAGATTAAACTAAGGAGAATTCAGCAATATGGAGtgGAAGTGACTCTGGATCCTGATACAGCTCATCCTAACCTCATCCTATCTGATGATAGAAAACAAGTGAGACATGGAGACTTGCGAAAGATTCTCCCTGATAATGCAGAGAggtttaattatataatttgtgtGTTGGGCAAGGAGGGATTCTCCTCAGGGAGATTTTACTATGAGGTGCAGGTCAGAAGGAAGACTCAGTGGGATTTAGGAGTGGCCCAAGAGTCTGTTAACAGGAAAGGACAGAATACATACAGCCCCAAAGAAGGGTACTGGATTGTGTGGCTGAGGAATAAGACTGAATATAAAGCTTGGGACTCTCCTCCTGTTCCCCTCTCCTTGAAACAGGCTCCTCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGATCTCCTTCTATGATGCTGATGCAAAGTCTCTTATCTACTCTTTCGCTGGTCAGAATTTCACTGAGAATCTTTATCCATACTTCAGTCCCTGTCTCAGTGATGAAGGTAAAAATTCAGCACCACTGATTATCACCCCTTAAACTTTGTAAGCAACAATTTACAACTTTTTCCTTTCAAAACAAAATTGGCAAATCTCATTCTCtttatttaatgacaaaaatacTTACACAGTGAGTCAGTTCTAACTGaacagattacattttttattttttatgcacTTACTTGGAAAATATTGCTACGGTTACTAAGCCCTTAATAAAGAACTCTCTGTGGTGAAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70266 lncRNA downstream 8641 4580941 ~ 4596531 (-) False LOC117597175
XR_004578075.1 lncRNA downstream 8643 4593407 ~ 4596529 (-) True LOC117597175
XR_004578076.1 lncRNA downstream 13404 4590344 ~ 4591768 (-) True LOC113547239
TU70264 lncRNA downstream 41677 4562924 ~ 4563495 (-) False LOC117597059
TU70259 lncRNA downstream 44662 4559733 ~ 4560510 (-) True G59385
TU70281 lncRNA upstream 67603 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA upstream 67603 4677165 ~ 4678736 (-) False G59398
TU70282 lncRNA upstream 67997 4677559 ~ 4678736 (-) False G59398
TU70306 lncRNA upstream 147869 4757431 ~ 4757765 (-) True G59416
TU70478 lncRNA upstream 260598 4870160 ~ 4914451 (-) True G59559
XM_034303593.1 mRNA downstream 33345 4560788 ~ 4571827 (-) True LOC117597059
XM_026947467.2 mRNA downstream 78065 4514603 ~ 4527107 (-) True maf1b
XM_034303587.1 mRNA downstream 320780 4269168 ~ 4284392 (-) True LOC117597053
XM_034303795.1 mRNA downstream 348894 4230485 ~ 4256278 (-) True LOC113537670
XM_034303797.1 mRNA downstream 395066 4171199 ~ 4210106 (-) True LOC113547240
XM_026947466.2 mRNA upstream 3466 4613028 ~ 4633265 (-) True LOC113547217
XM_026947531.2 mRNA upstream 24763 4634325 ~ 4640284 (-) True LOC113547273
XM_026947529.2 mRNA upstream 32458 4642020 ~ 4647759 (-) True LOC113547272
XM_026947528.2 mRNA upstream 41132 4650694 ~ 4660380 (-) False LOC113547271
XM_026947527.2 mRNA upstream 44983 4654545 ~ 4660380 (-) True LOC113547271
TU70115 other downstream 348888 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 369933 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 685041 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 880607 3710571 ~ 3724565 (-) True LOC117597100
TU69907 other downstream 971939 3630059 ~ 3633233 (-) False si:ch73-174h16.4
TU70276 other upstream 36894 4646456 ~ 4647880 (-) False LOC113547272
trnar-ucg_1 other upstream 200230 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 868980 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1290687 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1290687 5900249 ~ 5959545 (-) False G60166

Expression Profile