RNA id: XM_034304016.1


Basic Information

Item Value
RNA id XM_034304016.1
length 2152
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113547265
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5240683 ~ 5252849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTAGATTCTCTCACACAGACCTGGCAACTCTGCTCTCACTTCATAGGAAACGGAAATCAAACTAATCTGTATCTGTTCAGTCTGAGGGCGTAGAGCGTGCGGATAAGTTTCataccatttttcttttcttcagacACACCTGTTTTCCACACAGCTTTTACAAGCTGAACCAGGAAGTGTGAGCTGCAGTTAGTGACTGTGTGAGAGTTTGTTTTTAGGTAAAATGGCAGAAGCTAATATTTTAGGACTTCAGGATCATTTCAGCTGTTCAATCTGTTTGGATCTACTCAAGGATCCAGTAGCTCTTCTTTGTGGACACAGTTTCTGTATGATGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAAGGGAGTCTATAGCTGTCCTCAGTGTAGACAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAACACCATGCTGGATGAAGTAGTGGAGACCCTGAAGAAGACAAGACTCCAAGCTACACGTCCTGCTCAAAGTTCAGCTGGACCTGAAGATGTGGAGTGTGATTCCTGCACTGGGAGAAAATCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAAGTGCTGGAGGTTTACTGTCGCACTGACCAGCAGTGTATCTGCATGTTGTGTACCATGGATGAACATAAAGGACATGATACAGTATCAGCTGCAGCAGAAAGAGCTGAGAAACAGAAGCAGTTGATGGGTATACAGGAGAAATCCAAGCAGAGAATccaggacagagagaaggagctTCAGGAACTGTGGAATGCTGTGGAGACTCACAAGCGCTCTGCACAAACAGCAGTGCAGAAAACTCAGAGGATCTTTACTGAACTGATCAAATCCACTGAGAGAAGACGCTCTGAAATGACAGCGCTGATCAGAGCTCAAGAGAAAGCTGCAGTGAGTCGAGCTGAAGGAGCCATGAAGCAACTGGAAAGGGAGATTGCAGACCTGAAGAAGAGAGACGCTCAGTTGGAGgagctttcacacacagaaGATCCCATCCAGTACCTCCAGAGTTTTCAGTCTGTCTCGACCCCAACTGGACCTACAGACTTTCCCACCATCACATTAAGTTCTCTGCTAACTTTTGAAGACGTAACAAAGTCTGTGTTTCAGCTGAAAGAGAAACTAGAAGAGTACTGTAAAGGCGAGTTTGAGAAGATATCAAGTGGAGTGAGAGATGTCCAGATCCTACCACCTCCTCTTCCTGCTCCTGTTTTCACTCTAAAACTCCAAAGCAGAGAAACCTGTCTTCAACAAGACAAATACCCAGCTCTGTCTTTATTCAGGACCTGGCAGAAGTGAGAAACCTGCAGATCAATAACTAGTGTCACTCTTAGTGACACTTGCACTTTACAGCGCTCCTCAGTCTACagtctctctttgtttttgtcatttaatcACAGTTTCTGCTCTCACGTGCATATTGTGGAATAATCTGTGTAATCTTCATAGGAATGAATAAGAATTTAAGGATGTTTATCTTGGATTTGTTGATATACATTGATGAAATGAATACTATATTTTGTGTAAGGCGATAACAAAACCAAAGCAGTTATTTTGTTATAAGTAATGTTTTTCTAGTATTTCACTGTATACAACATTTTTCAAACAGAACAATTAAAGAGCTCTGTATTGGTGTTCATCTGTTGATGAAAATGATTAACCCTTTCATATTAGAAAAAGTCTTACAGTGGATCAGAGATGTTTCCTTAAAGCAAATGTaaaatggaatttgatgtgtGCTGTTCTTTCTGAAGACTATTCTGCACCTATATATTTTTCTCCCCAAAAATTTAAAAGATGTTCTTGTAATAACTGACCTGAAAATTTTAAAGCAGTTGTTTCACCAAAGTGTACTTTGTGTTATTCTGACCCAGAAgcttttattaatgtatttttccaagattaaaaatttttttttgctgatagctttaaatttttttagctttattcATTTAGATGACATAAATAAcagttttgtttgtattgtGATGCAGTTTCATCTGTAATCGGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70430 lncRNA upstream 222881 5011920 ~ 5017802 (+) True G59521
TU70431 lncRNA upstream 222881 5011920 ~ 5017802 (+) False G59521
TU70396 lncRNA upstream 225870 4993489 ~ 5014813 (+) False G59492
TU70379 lncRNA upstream 282369 4958062 ~ 4958314 (+) True G59483
TU70375 lncRNA upstream 288085 4952371 ~ 4952598 (+) True G59479
XR_003404806.2 lncRNA downstream 11167 5264016 ~ 5266014 (+) True LOC113547270
TU70597 lncRNA downstream 49033 5301882 ~ 5363888 (+) True G59663
TU70598 lncRNA downstream 49033 5301882 ~ 5369456 (+) False G59663
TU70634 lncRNA downstream 138062 5390911 ~ 5391425 (+) False LOC113547289
TU70665 lncRNA downstream 176432 5429281 ~ 5429622 (+) True G59725
XM_034304018.1 mRNA upstream 30922 5195675 ~ 5209761 (+) True LOC113547266
XM_034303598.1 mRNA upstream 48938 5191076 ~ 5191745 (+) True LOC113547246
XM_026947515.2 mRNA upstream 50970 5179554 ~ 5189713 (+) True LOC113547261
XM_034304015.1 mRNA upstream 52637 5179562 ~ 5188046 (+) False LOC113547261
XM_034304013.1 mRNA upstream 74653 5152320 ~ 5166030 (+) False LOC113547260
XM_034303601.1 mRNA downstream 33508 5286357 ~ 5306541 (+) True LOC113547263
XM_026947553.2 mRNA downstream 135519 5388368 ~ 5391829 (+) True LOC113547289
XM_026947549.2 mRNA downstream 149435 5402284 ~ 5410215 (+) True LOC113547286
XM_026947542.2 mRNA downstream 178387 5431236 ~ 5433720 (+) True LOC113547281
XM_026947568.2 mRNA downstream 196633 5449482 ~ 5466119 (+) True angptl1b
XR_004578077.1 other upstream 52637 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 232550 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 285221 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 532285 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 587562 4650477 ~ 4653121 (+) True LOC117597167
TU70896 other downstream 327295 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 886451 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 890716 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 1177637 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 1342277 6595126 ~ 6596561 (+) False LOC117597080

Expression Profile