RNA id: XM_034304033.1


Basic Information

Item Value
RNA id XM_034304033.1
length 5660
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC113540389
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27174061 ~ 27237097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggggtggagGAGACGGAGGTCCGCTCGAACCGGGATTTCTCCCTTTGTTTTGTGGATGAACGCCGTGATAAACGCGATGTGGACCTTTTTAGGACGAGTAATATTTTTTCACTTGCTCACCATGCAGCCTTATTTCGGAAAAGGGTCCGAAACGGAGTGCGAGGACGGACAGTTTCAGTGCAAGAACAAGAGGTGCATCCCGACTATATGGAGATGCGACGACGACGACGACTGCGCCGACAACAGCGACGAGGAAGACTGTCtgaagagCACGTGTGACCCGGCAGAGTTTGCGTGTCAGAACGGACAGTGTGTGTCCAGCCGCTGGCTCTGCGACGGAGAACCCGAGTGCACAGATGGATCAGACGAGGCCGAGTCCACCTGCACCGTGAAACAGACGTGTCCTCCAGACAAGTTCGACTGCAGAGGGACCTGCGTGTCTCCGGCGTGGAGGTGTGACGGAGAGAAAGACTGCGAAAGTGGAGCGGATGAAGAAGACTGCGCTGCTGACGCTCGCTCCTGTGCTTCCGGAGAGTTCCAGTGCCGTAACCTGAAGTGCATGTCTCCGGCGTACGTATGTGATGGTGATGACGATTGCGGCGACGGCACTGACGAGGAGCAGTGTTCCCCGCCGTCGTGCAGCCCACTCCAGTTCCGCTGTAACAGCTCCGAGTGCGTCCCGCAGCCCTGGACCTGCGACAGAGACCCGGACTGCTTTGACGGATCGGACGAATGGGAGGGGCTGTGCGGCGACGGAGCTGGGCGAACGCTACCTCCAACGAATCTCAGGCTTGAGTGCAGTGCTGGAATGTTCCGCTGTAGGAGTGGAGAGTGCATCAAGCTAGCGTGGTGGTGCGATAAAGATCCGGACTGCATGGACAGATCAGACGAGTCCGACTGCCctcTCCTCACGTGCCGGCCTGATGAGTTCCAGTGTGGAGACGGCTCCTGCATCCACGGCATCAAGCAGTGCAATAAAGTCTTCGACTGTCTCGACCGGAGTGATGAGGCTGGCTGTGTTAAtgCCACAAAGTGTGAAGGACCTTTGAAGTTCCTCTGTAGAAATGGAGAGTGTATCGATGGAGCaaaggtgtgtgatgatgtcaaGGACTGCAAGGATCGATCGGATGAGCCCAAGAGGGAATGCGGTTTAAACGAATGCACAATGAATAATGGAGGCTGTTCTCATATCTGTGTGGATCGACCCATCGGCTACGAGTGTCAGTGTCCCGCTGGATACAAACTCCTGGATAAAAGGACATGTGGAGACATCGACGAGTGTGAGAACCCAGATGCCTGCAGTCAGATCTGCATAAACCTCAAGGGAGACTTCAAATGCGAGTGTCACCCAGGCTATGAGATGGACCCAGTGAGCAGAACCTGCAAAGCAGAGGGAAAAAGTCCCTACCTGATGTTCACTAACCGACACGAGATCCGGCGCATTGACCTGGTGAAGCGGGACTACACGCAGGTCGTTCCCACTCAGAAAAACGCCGTGGCCATCGATGTGGACGTCGCCGCCAACCGCATGTTCTGGTGCGATCGCTTCCATCGCAAGATCTACAGCGCCTACATCCACGAGGCGAGTGACCCGGCCCATCACATGACTCTGATCGACTCCGAGCTGCTTTCCCCAGAGGGTCTGGCTTTAGACTGGGTCCAGCACAACCTCTACTGGACTGACTCGGGTCATGGCACCATCTCGGTGGCTTCATCTGATGGCAGCAGGAGGCGTGTCCTGATCCACACTGACCTGAGTGAACCGAGGGCCATTGCCGTGGCTCCAGAGCAAGGgtTCATGTTCTGGTCTGATTGGGGAACGAGGCCCAAGATAGAGAAGGCAGGGATGAACGGAGTGGACCGACAGATTTTAGTGTCTGACGGCATCGAATGGCCCAACGGCATCACGCTGGatgtggtGGGAAAGCGACTGTACTGGGTGGACTCAAAGCTCCGTCTGATCTCCAGCGTGGACTTTAACGGAGCTCATCGCAGAGTGATCCTGTCCTCCAGCGAGAGACTCGGCCATCCCTACGCCCTCGCCGTGTTCGAGGACCGTGTGTACTGGACGGACCGTGAGAAGGAGGCCGTGTACAGTGCGAACAGGCTCACTGGGCAGGATGTGACCAGCCTCGCTGAACGTCTCAAAGATCCACACGATATAGTGGTGTTCCACGAGCTGAGTCAGCCCCAAGcCGCAGACAGCTGTAACCTGGTCGGCGTGAGTAATGGCGGCTGCGCCTTCCTGTGCCTGCGCGCTCCTCAGATCAGCGATCACTCACCCAAATACACATGCGCCTGTCCCAACGGCGAGGAACTGAGCCCGGACACGCGAGTGTGTGTCCCCATCCAAAACGTCACAGTCGCACCAACGTTCCCCAGCTTTCCTCCAAACAGCACTGTGGAGTCAGAGTCAGTGACAGAGGCAGGAGTGGACGTGGTGACCTCAGAAGTGTCATTGAGTTCGGAGGTCGTGACCTTTCAGGAAAAGATCGGTCCATCAGAGCCCACGCTGAACATCACAGTAGCGTCCGCTCAGATCCCAACTGTGCAGCTAAGCACAGCTCCAGGAGAGGCCAACAACCTGTCCCatcactCTGGAAACGAGTTGTTTCTCCTCGGACACAGTGTACCCGTGGCCGTGCTCGGAGTTGGAATTCCCATCGTGGCGTTCGTGCTGCTTCTCTCCGCTTCCTGTCTGATTTATCGTAACTGGAGACTCAGGAGCACCAAGAGCATGAACTTTGACAACCCTGTGTACCGGAAGAGCACCGGCGAAACTGAGGAGGACGAGATCCACATCGGGAGGAGCGAAGGGCTCGCCACGCACCACCACCCTTACCCAGTGCCTGTGGTTGGCACAGCGACGTGTCCGCCGTTCATTGCTCTGCCTCTGGGTGGTGCTGTTACAGATCCAGTCCCACACTGGTACACAGAGCCGCCCACCATCACCAGCGCCAAGTGAAAGTCAGCAAGGACTTGGTGTGAGAGTCGGGGTTTCCATGGGAACagtgtttaaagtgtgtaaCGAGACACTGAGCTGAGGCCGAGtgtcaaaagtttgtacacccacTAGATCATATGTAGCAGGGGTGTGTCTCTCTTGAACGATCCGATGTGTGAatgatgaattttaaaaaagcagtaaTGTAAAGATATGATTAGATGCAGTGCTGTAGAGATGCAGTAGCCCCACCTCCTTTActcagaagagagagagaatactaaaggaaataaataaataaatataaattagcTGAGCACAGACGCGATCGATCTTCTCACCATCACTGATACACAAAAAATATcaatacagcttttttttttttcatgtttaggACTTTAACACAGACTGCTGCAGGAACAGTGCAGATTTATGGCTGAGTTATCTTctgtttttgaatgttttgaGAGTATTTACCCAAGATGCTACTGTACttccaatatttaaaaaaagcgcACGtttcacagacagagagaacactGACGTCGTGTCTCAAACACTTCCTGAAAGtgcaatcatttaaaaatattttatataatcctTCTTTATAAAAGCTGCTGTTAGTTTCTCTGTGATAAAATATAATTGTAATACAGAAAATCATGTGCAGTGTTTTACAATTTCAGTCGCCGTCCGTCTTTTACTTGTTGTTCACTGTGCAGACTCGCTGAGACAGAAGAGCCACGTGCATACGGATATGACGGGTCGATAGTAATTAGTGCTTTGTATGTCCATAGATTCcgtctgttctgtttttttttctcactacatcatgttgtggggaaaaaagtcagGAAGTTTAACAATAAACATGAAAGTCTTGACAGAAATGCGCTAACCGTTACTTTTTTACAAAACCTATGCAACAGCAGGCTGCTGCAGGAAGTAAAGGAATGTCATTAagtaaagctttttttaatcGCAAAATGTCTGATTAAAGGAAACGAggtgctggaaaagcaaagttcgcaaacttttttttttttttgtcttagtgaCTCAGATTTctgcagcaacaacaataacgtAGTTATTTCCACTCTCTGCAGCCATCGGTGCTCATATTGTTTGAATTTTGACCCCACTAGTACACGCTATTACACCCAGAGTGACATCCTTTGCCTCTGATAGTCCCACTGAGGctttttcagctttatttgaTGGAACAGTCCATTATATTAATCAGAAGGGGGCGATTTGTAGAACCCTGCAGaactctgtttttctctctctcatgtctctGTCAGTCTCGTTTCTTCCAGACTGCAGTAAAGGAGGGAAAATTAGCACTGCATCAACTGCTACATTAGCATTGTAATAAAATTAAGCTAAGAAGTTGTTTTTTAGTCAGTGGAACACTCCGTGTGTTGTGTTGGTGAAACCTGTTTACAGGAAACAGGTAGTGCACAGAAGGTTCTTTACCTCATGTGTGGACTGGAGTGTGCagtattgtctcagggagttggtacactgtgtgtgtatgtgtatgagtgtgggtgtgtgtgttcagtatgaGGATTACCAGAAGAGATCCCATGACAATAATATTTAAGcatatataaagtaaaaatctgctgagttttttgtttgtttgttttttttttcattttaactaaATCTCTGATTCTGATTACAACAGATAAGAATTCGGACTCATGCACTGATCTGTGAAAAGAACCACAAATCTATTTTAGTCCAAACTCACTTAAGAGTAGCTGATGGATTATGTATAAACCATGAATTCAAGCCTCCAGTCaataaaagaacaataaagGGCTGAGGATGAGACAGACGTGAGAGAAAATCTTACCAAAGCATTCAAGCATGTGTGTGAGGACGCCTACAGATGATCACCATTGTGCATTTCGCTAACAGTGAAGGTAGATGCACTCTACAATTGGTAAGAGTGTTTACCGCAAGGCCATCAAAACGTGTGAAAACATACATCATTCATAAAATTAGTCCAATCTGCATGTTTCTAAATCCAGCATTTATCTAAATCTCAACCAAAAAAAACGGTTCTGGCTTTGGGAGATAAGAGAAAACACGCATCTTTGCTACATTCAGttcagtacatttttatttgtatagcacttttaacaatggacattaaaGCAGCttggtcacaaagcagctttacagaaatccggttataacatttttattttaattctatcACATACATCATATATACGTCACACATGACGACTCATATTATTAGGTGTGCTTTGAAAAGGTAAAGTTGAACTTGAGTGAACTTCAAGCGCAGCACCAAGGCATCAAATCCAAGTGGTGCGCTCCTCCCAAGGCTGAGTTACCTTCAGGCAGAGCAGCACCTCTGGGAAACGATGCGGTTTCATCTGTAGGTGGCTGGATAGAGGATTTGTGGTATACATACGCCATCGCGTGACTACCACAAATACACTGTACAACTCAATCTGAAATTAGTGCTTTGGGGATAAAAtggttaattttttaattttctctccatcaaaacttcatcacatcaaGGATAACTGGAAGGGGGaagaagtctgtgtgtgtgtgtgtgtttgagagattaacctgtttgtgtgaaagctgAACTTACTGTAAAGGTTTTCATACAAATACTTTTGATAtgattatgtaaaaataaatgtacataagATTTTA

Function

GO: NA

KEGG:

id description
K20052 LRP8, APOER2; low-density lipoprotein receptor-related protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85154 lncRNA upstream 99985 27073841 ~ 27074076 (+) True G71827
TU85145 lncRNA upstream 131149 27042703 ~ 27042912 (+) True G71819
TU84807 lncRNA upstream 292592 26872676 ~ 26881469 (+) True gng7
TU84796 lncRNA upstream 317456 26808057 ~ 26856605 (+) True G71557
TU84789 lncRNA upstream 387501 26784572 ~ 26786560 (+) True G71550
TU85277 lncRNA downstream 46963 27284060 ~ 27284463 (+) True G71941
TU85275 lncRNA downstream 50076 27287173 ~ 27289705 (+) True G71939
TU85279 lncRNA downstream 56259 27293356 ~ 27295364 (+) True G71942
TU85325 lncRNA downstream 134376 27371473 ~ 27371678 (+) True G71977
TU85328 lncRNA downstream 143751 27380848 ~ 27381072 (+) True G71980
XM_026935836.2 mRNA upstream 22937 27144064 ~ 27151124 (+) True ebna1bp2
XM_026937317.2 mRNA upstream 135702 27030740 ~ 27038359 (+) True LOC113540681
XM_034303201.1 mRNA upstream 135702 27030740 ~ 27038359 (+) False LOC113540681
XM_026937332.2 mRNA upstream 160416 26983742 ~ 27013645 (+) False LOC113540685
XM_026936094.2 mRNA downstream 28473 27265570 ~ 27270794 (+) True LOC113539951
XM_034303330.1 mRNA downstream 37075 27274172 ~ 27286654 (+) True LOC113539841
XM_026935910.2 mRNA downstream 37075 27274172 ~ 27283729 (+) False LOC113539841
XM_026937006.2 mRNA downstream 75980 27313077 ~ 27318012 (+) True LOC113540484
XM_026936714.2 mRNA downstream 88654 27325751 ~ 27371031 (+) True pde4bb
XR_003404108.2 other upstream 60807 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 509979 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 798282 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 809828 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 881277 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 252156 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 319420 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 320668 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 383508 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 384214 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile