RNA id: XM_034304043.1


Basic Information

Item Value
RNA id XM_034304043.1
length 2833
RNA type mRNA
GC content 0.43
exon number 7
gene id arl8
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21934492 ~ 21945588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGGGAACCCTAAGGCGTTGGGGGATGGTGGTGCGCTAGTGTACAGCTGGGCGCTAAGCaccactactgctactactgctgctgcttaCTACCCGCTTAACTACACCGGAGACACCTCGTGTTCGCTTTAGTACCCCGGCGGCCAGTCCACGCTGGAGACTGGGATGTGACTGTAGCGGATTACAGAGCAGCTCGGTcagcagtacacacacacacacacacacacacacacacactctctctctctctctctctctctctctctctctgagactCTGTGAGATGTGGAGGCAGCGCCGGCTTTTGACAGAAACTGAGGTGCCTTGCCTGGCCGGGGTGTAAACATCTTTTCCGCAGCGCAGACAGTCGGCTCGTTGCTCCCCGGAGATGGGCTGTGTGGAGCTAGCGTAGCCGGGTAACATAACGGGTTAGCAGGACCGCGCGGCTCAGGCCAGGCCGCTCCTCTCTCCACCGCGCGCGCCACAGTCTCACACAAAGCCATGGGCCTGATTGTAGCCAAACTGTGGAGCTTCTTCTGTAATCAAGAACACAAGGTGATCATCGTGGGTCTTGACAATGCTGGAAAGACGACCATTCTTTACCAGTTCCTGATGAAAGAGGTCGTCCACACGTCCCCAACGATTGGCAGTAACGTTGAAGAGATCGTTGTGAAGAATACACACTTCCTAATGTGGGACATTGGTGGCCAGGAGAGTCTTCGGTCCTCTTGGAACACCTACTATTCCAACACCGAGTTCATAATCCTGGTAGTGGACAGTACAGATAGAGAAAGGCTTGCTATCTCTAAAGAGGAGCTGTACAGAATGCTGGCACATGAGGATTTGCGTAAAGCTGCAGTGTTGATTTTTGCTAATAAGCAGGATATGAAGGGCTGTATGTCTGCAGCAGAGATTTCAAAATACCTGACCCTCAGCTCCATCAAAGACCATCCATGGCACATTCAGTCCTGCTGTGCTCTTACAGGAGAAGGGCTGTGCCAGGGCCTGGAGTGGATGACCTCGAGGGTGGGACTCAGATAGCCTCCACCACCCTTACAGGACTGGCTTCATTTACAGCCTTCACCACAAATATCTGGCAGCAACTCGGCCTCATCCTATTggctgctttttattattattattattattatttgattttaaacttttaagCTCATGATCAATGTTCAACCTCTCTGGACACCTACCTCACCTCGGAATGACCGGATACTGGTTGATTGATTGGACAGACATCTCAGCTTTTCAGGACAAGTTTAATCGTGCAGGTGAAAGAAGGGAAACACACCGTATCTGAAATGTTACTGCTTACAGAGAGGCAAGAGACTGCGTGCTTTGAACACTAATTTTTTGGAAATGTTCTCTGTTCTGGTTTAGGAATGTTGGGGGCTATGGTGTATTTTATTGGACAACATATTTTagtggtaattttttttccaaggtCAATTCATGGATCAGGGAAGTCTGTTGCTTGGTTGGGGGGGAGGGGAGACTTGTATGGGGTGtctaacaaattcaaaaaccaCTACATTACATATCATGTCGCATTACCTCAGTTGACAGCACTACAGTCACTCGACCAGCCGTCATTTACCCAGCCTGGTGCAACTAATGCATGACCACTGAAATGTGGCATACAGGTTGGGTCAGTAATAGtgatttcttttcattaatttatgtCCGTTATTTAAGGTCCtcaaatgccttttttttttttttttccctccctaaCCATGTTTGTGCTGTTACATAAAATGTGCTGATTTTCCACACATCCGTTGTAATTGCATTGAGGACTGGTTACTAATTTGTATTCCTTAGCTTACGTGAGGATGAAACATGGATTATGGGTAAACTTGAAAATCCTGATTTTAGTGCtaattgtattttgttttaatatttcaggtaccagtttgtattgtttttatacTGGTGATTTCATATGCTGCATCAAAACACTTTTACtcagatttgtgtgtgtctcaggctGGTGAGCATTTTCTAAATCTATTCTAAATAATGGGTGCAAACTGAGAAGCAATTTCAAAATATAGGAGCTCTGTTCAGTTCTACAGTTTTGAACAATGAAAGTGTTCTTGAACAGATTCCTCTGTGATTTTGAAAGATTGGCTGTACAGAATGAAACCATGCATATATGAAATATTACCTTTTTTGGATAGTTGCTGGAACTACCTGTTGTGTGGGattattcatgaaaaaaatgttttccttttttgaaatttatttggAACAGAAGTGACAAGGTctagatataaaaacatgttttgaactgaaattaaaataggCCTTTGAGTGAGTTGATTCCACACAGGAACCAGATGTTTTATGCTGATGTTGGAAACCCCAGCCTCAGCCTTTATAGGAGTTTACAGGTATGCCTGTGGGATTATTAGCATAATTGAGGCATTGAACTGTGCATtcctctgcttttatttctttaacactTAAAACTATGCTTGCCTGCTTGAACACCAAATAGTACAGACCTGGAAACCAGTGAAGCTTTTGCCTCACTATCGGTAACCATGGTTTTTGTTATATGGTTCcagcatatatatgtataatttttttgctgAATGGATTGTGAGGGAAGACAAAAGGGTCAGGGTTCACTAAGTATGCTGTTGACTCAGAGGCACAGATTCATTAATCTGCAGTTCCACCGATTCCTCATTTCATCATCAGCCATTGATTTCCTATTCGGTGAAATCTGACGTGCCATTTCAGCATAAGCGGGAGAAATATGTATCaacttttatatttctgtaattttataataaatgcttttattttgaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81502 lncRNA upstream 16716 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 172210 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 172263 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 185173 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 447004 21486974 ~ 21487488 (+) True G68523
TU81775 lncRNA downstream 299000 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 437506 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 447251 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 581740 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 704355 22649943 ~ 22652447 (+) False LOC113540463
XM_026936359.2 mRNA upstream 20260 21849641 ~ 21914232 (+) False cacnb2a
XM_026936361.2 mRNA upstream 20260 21849642 ~ 21914232 (+) False cacnb2a
XM_026936362.2 mRNA upstream 20260 21878114 ~ 21914232 (+) False cacnb2a
XM_026936365.2 mRNA upstream 20260 21878114 ~ 21914232 (+) False cacnb2a
XM_026936360.2 mRNA upstream 20260 21884260 ~ 21914232 (+) True cacnb2a
XM_026937183.2 mRNA downstream 29155 21974743 ~ 22035561 (+) True malrd1
XM_034303946.1 mRNA downstream 99428 22045016 ~ 22163581 (+) False plxdc2
XM_026936701.2 mRNA downstream 99429 22045017 ~ 22163581 (+) True plxdc2
XM_034304011.1 mRNA downstream 224744 22170332 ~ 22184685 (+) True nfx1
XM_026936559.2 mRNA downstream 245098 22190686 ~ 22239624 (+) False smarcd3b
XR_004578015.1 other upstream 172191 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1372916 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2163207 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2913438 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3762239 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3952547 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile