RNA id: XM_034304045.1


Basic Information

Item Value
RNA id XM_034304045.1
length 1662
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113539982
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20579774 ~ 20582012 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTCAGTggaagtaatttttttcttcttggtGGTGTGTGGTTATGGTACCACTGTTCCACTGTCAGATGAGGGCCGAGTGTTTTGTATGCTTTACTGTGTCTTCGGTATTCCTCTCACCTTCCTCCTGCTCTCCTGCATCACCCATGCCCTGGTGCCCAGACTGAGTCATGCTCCCATACGCCACCTTCAGATCTACTGGGGTCTGTCTCGCAACAAGTCGGCCCTGATTTACTGCGGAATATTAGCGGCGAGCACAGCGACACTGTTCTTCCTGCTGCCTGCTGTCAGTCTCTGTCTGTTGGAGAAAGACTGGAGCTTTCTAGAGTCATTCTACTTTTGCTTCATTTCGCTCAGTACCATCGGGTTGGGAGATTATCTGCCTGGACAGACGCACAGTTGGGCTGCACGGCAAGCACTGGAATTCGCCACTTCCTGTTACTTGGTGCTCGGTCTTGTTGTCTTGCTGGTTGTTATGGAGAGCTTCTGGAAGCTGCAGCAAGTGCAGGCCTTGGTGCGTCTCTTTGTTGGGTCTACAGCAGCCTCACTAAAAGAAGATGATCTTGATGAGCAGGCGCTCAGTGAATGGCCAGACAGCCATGATATTCCAACAGCGGACGTCCAGTTTAAGCCTCCTATCTCCATCATCTCACACCGCATATCTGACTTACCACCAACCCCTTCTGTGGAGGATGCATGTACACCATTCACGCCACAAGTGGCAAGTTACAAGAAGACCGTGCGTCCTCCACATCAGCCAGACACTGATCCAGACCCAGCTGATCAAAACAACTGATTACCAAAGTCAAATGCACATCTGTCTTGTTACTCGTTCCTGGGCTTTAAACCAAATCCTGCCTGATGCACCTCTGACACTCTGATAATCTCAAGGATTTATCTGCCTGCAGTCATTGCCAGAGTGTTGGAGATTATACAGGAATTTTAGGAATTTCCTGAAATAAGTGTTGTCTGCATCAAAATCGGTTCCCCACTGTTAAAGAAAATACTTCAtactttattttccatttaaagtTTCAATCCCATTATGAGCACAAACAATAGAGACATTCTTcaatacattattaaattaactgcataaatatatacagatgcTCAGAGTAAACTTGTAATATGTTTGAAAATTTTCTTTTAGTGTGTAGAGAAGTTCTGGAGTTAGTAATTTCAGAACATTTTTGTTGTGCCTAAGGCTATAAGAGTTGAACTCCAGTACATTATGGGTGGCAATATGGcattgtgatttattttcttatccAACAGTCACAAAACAATTAAACTATTTAATGAGGAAAAGATGGTACAAAATTGGTACAGAAATTGAGGCAGTTAAAGGCCCAAGCAATGACGTTTGCGAGGGTTGTGAGATGGCAAAACCACCTCAGCAATCTTACAAGTGAATAACAATGGTTTATAACAACGATTTATTATAGCTCAGAGACTCAGTGGTTTATAAAATCACCAACACTGTAAAAAGTGTATCATTAGTAAATTGTCATTTTTCCAAGCCCTGCTGTACCATATTGTTTTCCCGTAATGGATTAAAACTCACTTGGGgctgtttaaataaacaaattgatGTGTTTTGCTGCACATTTGTAAAATATTCTAttctttcatctttttattctgtaatcttttttctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80554 lncRNA upstream 98019 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 304099 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 512609 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 512736 20066030 ~ 20067038 (+) False dock11
TU80168 lncRNA upstream 614688 19962599 ~ 19965086 (+) False G67642
TU80678 lncRNA downstream 53336 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 110251 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 110251 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 282866 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 606519 21188531 ~ 21189134 (+) True G68299
XM_026937126.2 mRNA upstream 2293 20570371 ~ 20577481 (+) True taf6l
XM_026937127.2 mRNA upstream 9721 20567906 ~ 20570053 (+) True cth1
XM_026936852.2 mRNA upstream 14357 20549680 ~ 20565417 (+) True mta2
XM_026937252.2 mRNA upstream 35026 20504764 ~ 20544748 (+) False eml3
XM_034304143.1 mRNA downstream 5600 20587612 ~ 20619623 (+) True ehbp1l1a
XM_034304144.1 mRNA downstream 5601 20587613 ~ 20630986 (+) False ehbp1l1a
XM_026935945.2 mRNA downstream 5602 20587614 ~ 20630986 (+) False ehbp1l1a
XM_026935854.2 mRNA downstream 55216 20637228 ~ 20649186 (+) True si:ch73-40a2.1
XM_026936344.2 mRNA downstream 70563 20652575 ~ 20660555 (+) True rab1ba
trnaa-cgc other upstream 227289 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 425003 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 478676 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 750884 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 751392 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 438246 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 745334 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1047064 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1047064 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1170404 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile