RNA id: XM_034304049.1


Basic Information

Item Value
RNA id XM_034304049.1
length 4121
RNA type mRNA
GC content 0.50
exon number 9
gene id dtx4a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20352720 ~ 20372376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAACGGGCCAGCGCACGcaaaacacatcacatcacgGCGTTAAATACAcggtgtgtttttaaatgggGAGAATTCCTGTAGTGAAACTGGAAGGTGTCAGTGCCATGAACCCAGGACCCATCATGCGATTAACCATCATGTCAGCATAGCTTTATCATTTGAGCGGATTATCTCAGTAACTCGagagtagctagctagctctgcTGAAAaactggacacacacatacacacacaaacacacacacacacagacacagggacacAGGCGCGCGCGGATGCACACAAGCTTTTCCCAAATAAAGATGTGTCTGCTAAAGGAGCATGACTCGCCTTGGCTTATTTGAATGAACTCGCAGCTAAACGCACAAGGTCCTTTTCAGGTgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgaaatgttgcTGGCCTCGGCGGTGGTGGTGTGGGAATGGCTGAACGAGCACGGCCGCTGGAGGCCCTACAGCCCGGCTGTGTCGCATCACATCGAGGCGGTGATCCGCGGAGAGACTCGCGGCGCAGGCAGTGTAGCGCTCGGCCAGGTCGACTCCAGACTGTCGCCCTACATCATCGACCTGCACTCCATGCACCAGTTCCGCCAAGACACCGGTACATTGCGACCAGTGCGGCGGAGCTTCTATGACCCGCGCTCGGCTCCAGGTCAGGGCTGGGTGTGGGAGTGGGAGAACGACTCGGGCACATGGACGCCGTATGACACAGAAGTGGGAATTGCCATCCAGGCAGCACGCGAGCGCCAGCAGCCATGGCTGGACCTGACGCCGCTCGGCTTCTGCTATCTTATCGATCTACAGGGCATGACGCAGATCAACCGGCAGACACAGCGCCGGCGCCGTATCCAAAGACGATGTGACTTGGCCTACCCGCTCGTCTCAGGCCCTCTGCCTAAGCCTCATGCCTGGACGTCCAATGGGAGTGCAGCACACTCGGGTATGAGCGTGTCTGGGATCGGAGGAGGAAACGGAAGCGCGTACCCTAGTGGAGCCCTTCCTGCTTCAGCAATCACTTCTCTTGGTCAGCCTTGCTCATGTCAGCAGTGCATGCTGGTCCTGGGTGTCAAAACCACAAGCATGGCGCAGACTCTGGGCCGAAAATCCATGCCCCTGCCCAGGCCGAGGAGCCCAAAAACTGCCCAGCGGGGCCACTCGTACTCACTCACTCTGCCACACAGGAACTCCACAACAGCCGGAGGGTTTGCACACTCACTCTCCTTGCTGGACTCGGCCACGGCTGCTCTGTCTATTTCCTCCAcccgtcctcctcctcctgctgttcCTCCGCCTCCTCCACCTTCCTCTACTCCTCATGCTACCTCTCCACCAAATCAGACATCCTCCAGTGCTCTCATCTCCACAACTGCCACCTGTGCCCCAACCCCTTCAGCCCGGGTCTTGGGCCCTGTGTCTTCAGCAGCCTGTGCCGCCCCAGTGCCACCCCGTGCCAGCCTGGCAGGTCTCAGCCGTCCCGCACTGCAGAGGATCGCCATGGCACAGTCACGGGCACTTATCGCCTCCGGAGTCCCAACAGTCCCTGTTAAGAACCTAAATGGGTCCAGTCCTGTTCACCCAGCCTTGGCTGGCATAACGGGTATCTTGATGAGTGCCGCAGGACTTCCTGTCTGCTTGACCAGGCCACCCAAATTGGTGCTCCACCCCCCACCTGTGAGCAAGAGTGACATCAAGCCTGTGCCTGGCCTCGGCCACTGCTGCCGCAAAACCACCAAGAAACAAGCCCGCAAAGGCAGGACTCCTGAGGAAGTTGTGAGAAGGTACCTGCAGAAGGTCCGCAACCCTCCAGAGGAGGACTGCACTATTTGTATGGAGGCTCTAGCAGGTCCCTCTGGCTACAAAGGCCCTGGCGTGGGCGGCATTTCCCGGGCAGAGTCGGTCGGCCGTCTGTCTCAGTGTGGGCACCAGTACCACCTGCAGTGCCTAGTGGCCATGTACAACAATGGCAACAAAGACGGCAGCCTGCAGTGCCCCACCTGCAAGACCATCTATGGAGTGAAGACTGGAAACCAACCACCAGGCAAGATGGAGTATCACGTTATCCCCCACTCACTGCCCGGGCACCCCGACTGCAAAACCATCCGGATTATCTACAACATACCCCCTGGCATTCAGGGCCCTGAGCACCCAAACCCTGGCAAGCCCTTCACAGCACGTGGATTTCCCAGACACTGCTACCTCCCTGACAGTGAGAAAGGCCGCCTAGTGTTGAAGCTGTTGCTGGTGGCGTGGGACCGCAGGCTGATCTTCTCTGTGGGAACCTCCAGCACAACTGGAGAGACCGACACAGTCATTTGGAATGAAGTCCATCACAAGACGGAGTTTGGCTCCAACCTGACGGGCCACGGCTACCCCGACTCAGGCCACCTGGACAACGTTCTGGAGGAGCTGAGGGCACAAGGTATCACTGAGGAAGACTGTCTGAGGGACTGAGAGAACGAAAGGGACGAGACGTTGCGCCAAGTTGCGATCCAGAGATGAAATTTTGGAAGCAACTGGAACTTTAAGACTTTCCTCTGAAATTGAGAATCCAGTGTTaaagaaactggagaaactaGGAAAAGTCACAAACTCATTCCATTCTGTGATACTGACCcttctgatgatgatgaaagcTTTGAAACCAGATTGTGACCCACTTCTGCTTCAGAGCTGGTTTAACTGACTTGGACCATGAGGGCACATGGGTACAAACTAATTTACTATTGCTGGTGTCTGTTCAACAATTTCTCGTATTGTAGTTGTGTGAAGGGTACTCCACACTGAGGTACTTCTGTGCATGTAAGTATAACATTTGGTGGAATAAGTCCTTTTTTTGTATGACGGAGGCCCGTTTTTTGCTATGAAGCTCCAGTGGTGGAAGTTTCAGATGGAATGTGAATGTttactgccctctagtggcacTTGATTATACATTCCATCCATAATCATAGTACAGTCACTTGGTTTTATCATgggtttcatttttacttttatttacactACATTAATGAATTACTTTTATACTCATTTTAAACCTGTTGTAcctttattttatgttatagaTATGTAGTTCATAACTTAGAAGCCAATGATTTGGCATGATTTTGGATAATAAAGCCAATAAATCATTGTCGAGGGCTGCTAAACCTGTCCTTGGACATTAAACTCAACCCAGTTCAAGTATTAATCAGTATTAAAGCCAGCTAACAGTGCAGAAAAAAAGGGGGGTgatgacaaacacacaaaatggccAGTTTCCTCCTAACCCTTTAATTCACAAAGCCACATGGAAAGCATGAGtttatgaaaataaagttttattgtgATTAGACATGCAACCGGAGATTAAATGTACAACATATGGACCAGCGCTAAATTTAACCACGTTGCAGATAAATGTGATCTACGACATGTCAGActtgtgtagaggtttgacctAATGTCATGTAACTCAAGACACCATATTGGTCATTGGGGAGCGGTGTTAACTACCAGCCTGGAGAACGTGTGCTTGCTTTGGAACATCTGGTCCTACTTTGTGGGTAGATCTGTGCTGTGGTCTCCAGTTACTTTTCTAGTCAGTCATTGGTAGGTCCATGATGGACacgtttacaaaaaaaaaagtattgttgTCAAGACATTTGagcatgtgtgtacatgcaAATATAAGCTTACATTTATAGTTGAAGTATTACTGtgtgctgtatgtgttttatgtacACATGTTCTGACTCAGTACCATCTTTTTTAAGTGTTGCAGCAGCTCAGTAAGGCAAGCACTTCtaactctttttttattattattttaatttgttatacattttgatttttagtaATGTCTTATaagctgtatgttttttttgtactgtgAAGTTTTACTCACTGATTGCACTTGTATTTTTTCATGATAGTTGCTCTGGTTATTGCAGTAAAATTTCAGCCAGGAGGAAGCTGCAAAGAAACAGTGTATGGAGCTAGAACTATTGTTGCTGTgtaatataaaactgtacagAATAACGTGCATATTAAATAGCTGCTGGAATActgaatgaatattaaaaagaaGATATGTGTAGGGTTTGTTCATTTCAAA

Function

GO:

id name namespace
GO:0010001 glial cell differentiation biological_process

KEGG:

id description
K06058 DTX; deltex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80393 lncRNA upstream 77045 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 285555 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 285682 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 386832 19962599 ~ 19965888 (+) True G67642
TU80554 lncRNA downstream 108224 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 262972 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 319887 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 319887 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 492502 20864878 ~ 20895955 (+) True G68192
XM_026935887.2 mRNA upstream 843 20349428 ~ 20351877 (+) False si:ch211-119e14.1
XM_026935884.2 mRNA upstream 843 20349429 ~ 20351877 (+) True si:ch211-119e14.1
XM_026937181.2 mRNA upstream 7039 20333678 ~ 20345681 (+) False coro1b
XM_026937182.2 mRNA upstream 7039 20334019 ~ 20345681 (+) True coro1b
XM_026936084.2 mRNA upstream 20520 20318437 ~ 20332200 (+) True nectin4a
XM_034303464.1 mRNA downstream 1887 20374263 ~ 20377870 (+) True msantd1
XM_026936845.2 mRNA downstream 6399 20378775 ~ 20411656 (+) True rgs12a
XM_026936848.2 mRNA downstream 6399 20378775 ~ 20411656 (+) False rgs12a
XM_026936846.2 mRNA downstream 6399 20378775 ~ 20411656 (+) False rgs12a
XM_034303900.1 mRNA downstream 6447 20378823 ~ 20411656 (+) False rgs12a
trnaa-cgc other upstream 235 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 197949 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 251622 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 523830 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 524338 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 647882 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 954970 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1256700 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1256700 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1380040 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile