RNA id: XM_034304050.1


Basic Information

Item Value
RNA id XM_034304050.1
length 1623
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC117597185
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6775979 ~ 6778040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAGCTGCATATGCCAGTGGAGATCAAACCTGAGCTGCAGATAAACTGTCATCCTGAATCCGATATGCCTGGAATAGAGAACAGCAAAGCTGAgtccagagagacagacagaaatgaactgGGTGGATCAGCTGCCACGTATCGACTGATCAGTGTCCTCAGCCATGTTGGAAGCACAACATTATGTGGACATTATCTGAGTGATTGTTCCAGTTCCAGTCAGCAGTGGATGACCTACAATGACCAGCGGGTCACTCTGACCACCGAGACGGACGTGTTAAAGATGAGGTCGACTAGCGCCTATGTGCTCCTCTATGAGAGAGTTAGCACTGGCTGAAGCCCTTCCTCTTCTCTAGAAAGATGCAAGAAGATGCGGTGGGAAAGATGTCGGGGCAAGCGACAGTGTGGATGGCTTGGGGCCACGCAGGGGTGATGCAGATGGAAGATGGAAACTACGCGGGATTTTGCTAAGTATCTTTTGCGACGACGCTTTTGGCCTAGTGGAATTCTCATTGTGAGTTAAGTATGAGGCGTGTTAACGACGCTCATGTTAACGACGCTCCACCGGTGTAGCAGGTGTCTGTCGCAGCCAGACGACCTGCACCTGTGGGTTCGGCCCCTAAAACCGGTGAGCAGCTCGATAACTGCAAAGTAACAGTCCAGGAAGTGATCCTGAACTCTAGAGCTCCTAGTACGCAGGCCATGTATGGTCTATATGGGCATAGAGCATACATGTGGGTATGTATGCATTTTGTGGGCACTGCTGTATAGTGGCAAATCGCCATCTATGCCGAACGTGtatgtggcagccattttggctAACCACATCACAGTGGATAACATCTTGTTGGCAGCACATGGGCTCATAGCAGTGTTGTGAGCTAAGGAGGTAAACACCTCCATTTGCCAAACTCCCCCAAGAGCCAAACTGTTGGTGATAAATTCGCCCTGCGTGCTTTACTGGCCAGATGATTCTGGAGTGACCTTGTGGCTGAACCCAGGGTTCCTGCCTAAGGTTGTTTCTTGGACACTGTAGAATTGTACCTAAACacttctgctgtaatcataaacacccTGATGTTCATAAAGAACATCTTTTCAACACCCTCAGGACTGTCTATATAGTATATGATTGaggaagagtaatgatttataagctcactatctggtgtcacccagaagaggatgggttcccttttgagcctggttcctctcaaggtttcttcctcatgtgtcatctgagggagtttttccttgccactgtcgcctctggcttgctcattagggatttaaATACATCCAGATTTTTGGGACGGAATGTGTGCACAGTCCCGCTATCTGGATGTTAAGCACCACCCTTGGCAGTTATGAGATGCTCATAGTAAGCGATCTACTGCCAATTGATTGTCTGTCGGAAAATGTGTTGTCTCCAGCTTGAAGatcagcaaaaataaattgGATCTTACAGTATGTGTTTTCTTTGGGTCTGTTTTTAGTCCTATATGATCCTTAATAGTTTTTGATGTCTGACTTTGGAGCAGGCGCATTACGCAGGTAATGATGGTATATTGCACACGAACTCATAATCCTAGTTTGGTCTGTAACTAGCATTCGCAGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71581 lncRNA downstream 133794 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 173753 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA downstream 173753 6588011 ~ 6602226 (-) True LOC113547257
TU71370 lncRNA downstream 380908 6394865 ~ 6395071 (-) True G60333
TU71365 lncRNA downstream 385902 6389703 ~ 6390077 (-) True G60328
TU71799 lncRNA upstream 7287 6785327 ~ 6792952 (-) True G60672
TU71790 lncRNA upstream 100604 6878644 ~ 6881335 (-) True G60669
TU71867 lncRNA upstream 452614 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 464085 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 663222 7441262 ~ 7538818 (-) True G60846
XM_026947504.2 mRNA downstream 163137 6602800 ~ 6612842 (-) True LOC113547256
XM_034303940.1 mRNA downstream 215653 6518463 ~ 6560326 (-) False mylk4a
XM_034303939.1 mRNA downstream 215653 6518463 ~ 6560326 (-) False mylk4a
XM_034303938.1 mRNA downstream 244759 6518463 ~ 6531220 (-) False mylk4a
XM_026947558.2 mRNA downstream 244759 6518463 ~ 6531220 (-) False mylk4a
XM_034303606.1 mRNA upstream 316 6778356 ~ 6779988 (-) True LOC117597065
XM_034303607.1 mRNA upstream 1955 6779995 ~ 6789815 (-) True LOC117597066
XM_034303608.1 mRNA upstream 17045 6795085 ~ 6798486 (-) True LOC117597067
XM_034303462.1 mRNA upstream 32089 6810129 ~ 6812432 (-) True LOC117597003
XM_034303457.1 mRNA upstream 59439 6837479 ~ 6868065 (-) True LOC117597000
trnae-cuc_12 other downstream 332164 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 595020 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 816434 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 845780 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1290182 5478542 ~ 5485797 (-) False cldn1
TU71817 other upstream 104429 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 1797466 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2205194 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2536809 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2559786 9337826 ~ 9338745 (-) True G61537

Expression Profile