RNA id: XM_034304069.1


Basic Information

Item Value
RNA id XM_034304069.1
length 1396
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC113540619
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24021065 ~ 24024165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTACAAAGGGGTTAACATGATTAACAtggagttaacatggtcaatatcacaaatctGCTTACATgtaaatagtgacctagaaattgtaGAGATTAAAAGCGatctgcagacacacacagcacagtcttGCTGACAACATGGATGGTACACTAAAGGTTTTGCTGCTGGCACCCCTGATTCTGTTGGTTTCTGGCCAATCTTTTGAAAACTACAGAGACCTGCCTGACAAATATCAAAAACCTGTTAACAAAGCACTAGAAAAGGCAAACCATATCTTTGGAAAGACTCATCATGTTGCCTTCCATTCACTCGGACACCCTCGGAGGACTATGGAGAGCAACTTGAATGTAAATGTCCTTCTGATCATCACAACATGCAAGAAGGATTCCAAGAACACATATGAGCACAGAGATGAATGTGttacacaaaaacaacacacgCCGATGATTGACTGCGTTGTTTGTAAGACAACTGATGATCAGGAACTGGTTGACTGTGCCAGAAAGAGAGACGTCACTAGTGGAAGACGCAAAATGATTCGAGAAAAATGTAGGAATTATGCTCATGGATCAGCACACATTTTGAGGTCAGTGAGGGAGTGAAtgtgagctcaaagtgcagactttatGCTGTAATTTGAGAGTATtgacatccaaatcaggtgaacaatGTAGGATTAACAGTACATATTATATCTGCGcctccccccctttttttttttttttgaaaaggtgTTTTACCACCATGATTAAGCAGATtagtaaataaatcacattaaaaaagaGTGTTTTCTGTCACACTTTCAGGTTTTCTGACTAAGTCTGTTTTGCTATGGCGCATAACTATctaacaacttgatcaaagcatgacattaaCACCTATTTAGCAAAGTTTTAGACATATTTACGCATAATAGACCATTTTTCCCACCACAAAACGGGCCCCTTACCCAGcgtgatctttgcaggcagatgcCAAGACAAGGCTAAAAAGGTGAAGTAAAAAATTTCATGATGTTTTGGTGTATATGGTTTGagacttttccttttttttttttttggccacacTGACATCGGTCAGGTTTTCCCGCCACCACACAATCTTGTGTAGTAAacgtaaataaagtaaaaaggcTACATGTTACACCTCTATAACTGTATGTTGCTAAGAATAAATCTAAACTTGTGCATACTACTGTACATAGCAATGACTGCTCCTTAGTCTTACAAACTCAAATGTTGTGTcagtaattaatgttattttcagTCTTGCTTGCTGGAATTTAGTAGTAACAtaaaattatcattatttatgaCTTATCTTGTATAGCCACATGTAACTGATGTAATGTGTTTGCTGTTGTCTAGTACATAATAAAATGGTAGGTCAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82994 lncRNA upstream 11205 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 12402 24007703 ~ 24008663 (+) True G69946
TU82909 lncRNA upstream 77993 23940241 ~ 23943072 (+) True G69878
TU82898 lncRNA upstream 98369 23922117 ~ 23922696 (+) False G69870
TU82897 lncRNA upstream 98504 23921800 ~ 23922561 (+) True G69870
TU83005 lncRNA downstream 3941 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA downstream 59441 24083606 ~ 24084218 (+) True G69966
TU83047 lncRNA downstream 114470 24138635 ~ 24138888 (+) True G69987
TU83213 lncRNA downstream 542080 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 542835 24567000 ~ 24567318 (+) True G70130
XM_026936232.2 mRNA upstream 4322 24013856 ~ 24016743 (+) True LOC113540051
XM_034304162.1 mRNA upstream 370432 23648271 ~ 23650633 (+) True mycb
XM_026937348.2 mRNA upstream 370432 23648271 ~ 23650633 (+) False mycb
XM_026937124.2 mRNA upstream 379596 23614440 ~ 23641469 (+) True ankhb
XM_026935925.2 mRNA upstream 412864 23594961 ~ 23608201 (+) True otulinb
XM_026937230.2 mRNA downstream 65784 24089949 ~ 24104733 (+) True klhl18
XM_026936985.2 mRNA downstream 97388 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA downstream 97388 24121553 ~ 24127179 (+) True zgc:136930
XM_026937349.2 mRNA downstream 110511 24134676 ~ 24136808 (+) True ccr9a
XM_034303198.1 mRNA downstream 120917 24145082 ~ 24148968 (+) True LOC113540392
TU82445 other upstream 700722 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 2258764 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 84630 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 834861 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1683662 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1873970 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2204599 26228764 ~ 26229191 (+) True G71385

Expression Profile