RNA id: XM_034304070.1


Basic Information

Item Value
RNA id XM_034304070.1
length 2855
RNA type mRNA
GC content 0.54
exon number 15
gene id dvl3a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27562149 ~ 27582022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctactcaaTCAGAGCAATAGAAAAGCAGGAGCGAGCTTTAGTGCTggtgaggagaaagaaagaaagagagagagagagagagaaagggaggaaaAACCCAGCACGGGCTTGTTTAGTGTAGGTAGTGTGGTGTTAGTggtgttagtggtgtgtgtgagtgtgtgtgagtgtgtgtgttggtgagagAGTGCGGGAGGGAGATGAGGGCGCAGAGGAGCGCCGGGACGCGGGGGTAGAGCTGCTGTGCGCGTTGGAAGGTTTCCTGGCAACTCCGggggaagaaagaaagcaagcaagcaagagCGCGCGCGCGAGCAGGAAAagtcggggtgtgtgtgtgtgtgtgtttctcagcagGAGAAGGAGAAGCGAGCCCGAGTGTTGGAGGGGCACTGATGCCCACCGTGTCCTGTCTCTCCCCGGCTCTCTGCCATGGGGGAAACTAAAGTGATCTACCATCTGGACGAGCAGGAGACTCCGTACCTGGTGAAGCTTCCCGTCCCCGCCGCCGCGGTCACGCTGTCCGAGCTGAAGAATGCCCTCAAAAAACCAAACTACAAGTTCTTCTTCAAGTCCATGGACGACGACTTTGGgGTGGTCAAGGAGGAAATCACGGATGACAATGCCAAACTGCCCTGCTACAACGGCCGCGTGGTGTGCTGgCTGGTGTCGGCTGACGGCTCGCACTCGGATGGATGCTCGGTGGCAGAGAGTCAGTCGGAGCGGCCGCCGTCGGGGGAGAGATCTCAGGGCATCGGAGACTCCAGACCGCCGTCGTTTCATCCTAAAGCTGCAGGCAGCCGACACGGTGCAGACGATGAGACGGAGACGGATTCGGTGGTGTCGCACaggagggaaagagacagaccACGCAGGAAACAATCGCATGATCATTCAGGTGCGAGAATGAACGGTTACTCCCGAGTGGGCAGAGGGATGGAGCTCGGAGGCTACGACGTCTGTGACAGTCGCTCGTCCCTCATGAGCAGTGAGCTGGAGTCCAGCAGCTGCTTCGACTCGGATGACGACGGATCCACCAGCCGTTTCAGCAGCGTGACTGAACAAAGCGGCTCATCGCGCATGATGAGACGACACCGGCGCCGGAGAAGGAAACCCAAACCCCATCACATGGAGAGGTCGTCGTCTTTCAGCAGCATTACTGATTCCACCATGTCCCTGAATATCATCACAGTCACATTAAACATGGAAAAGTATAACTTCCTGGGCATCAGCATCGTGGGTCAGAGCAACGAGCGAGGTGACGGCGGCATCTACATCGGCTCCATCATGAAGGGCGGAGCTGTGGCAGCTGACGGACGGATCGAGCCGGGTGACATGCTGCTGCAGGTGAACGATATAAACTTTGAGAACATGTGCAACGACGATGCGGTGCGGGTGCTGAGGGACATCGTGCATAAACCCGGaccTGTCTCTCTGACGGTGGCCAAGTGCTGGGATCCAAACCCTAACAACTGTTTCACTCCCAGGAGTGAGCCCATTCGTCCGATCGACCCTGCAGCCTGGGTGTCTCACACGGCGGCCATGACGGGGATCTACCCTCCCTACGGCATGAGCCCCTCCATGAGCACGGTGACCTCCACCAGCTCCTCCATCTCCAGCTCCATCCCCGAGACCGAGCGGTTTGATGACTACCACCTGTCAGTCCATAGCGACATGGCAACCGTTGCCAAGGCGATGGCCTGTCCTGACTCAGGGTTGGAGGTTCGAGACAGGATGTGGCTGAAGATCACTATAGCCAATGCCTTCATAGgttCAGATGTGGTTGACTGGCTCTTCCATCACGTTGAGGGTTTTGCCGACAGAAGAGAAGCTCGGAAATACGCCAGTAACCTGCTGAAGGCCGGCTTCATCCGCCACACCGTCAACAAGATCACCTTTTCCGAGCAGTGCTACTACGTGTTCGGGGATTTATCTGGCAATATGGCGCACTTGTCCCTGCAGGAGCACGACGGTTCGAGCGGAGCGTCTGATCAGGACACACTCGCTCCCCTGCTCCACCCCGCCGAGGCTCCGTGGCCCAGTTTCCCGTATCAGTACCCGCCCTCGCTGCACGACGCACCTCACCATCACGCTGAGCCGGGCGGCGGGAGCGCCGGGAGTCATCACAGCGAGGGAAGCAGCGGTTCGAACTGCAGCTGGAGCAGAACGGATGGAAAGACGGCAGCGGCGGGGATAAACGACGTAACCGACACCCTGGAGTTTGACTTGCGTAGGGAGCGAGCACCGAGTGAGGGCAGCATCCGCAGCTCacgctctcactctcactctcactcctaCAGCGGCGTGTCTGGGGCACGTCATCTCGCCCACGTGCCCTCTGAACTCTCGGGCTCACGCCGCTCCTGCCTCACCGCCAACGGAGAGCTGTTCGTTGACATCATGTGACCACGACTGGATTGTGAACTACATTAAGaccatgttttctttctttcttttttttttttttattttaaaataaagaattgcatttaaaatatcagAATAGTACAAACTGTAACTCATAGCCCTGAAACATGGAAACtaggatcatttttttttttttttaaattaacattaggCTAAAAATGAATGGAAATAACAGTAGAATACAAAGCCCTTTTTCcccccgttttttttttttttttttgtatgtatagGTAATAGGCACATGCCGATAATCTCTCGTACAATATATCACAATGCTGAACTTTCTAAAATTGTCACTCTTTGTGTCTTATACGAGTGCCTAAATATTCAGGGTTTCTAGGtatcttttgtgtgtttgagaaattTCAGTCCACATGAGCGGTAATATTTTAGCAATAcagagtagtttttttttt

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003148 outflow tract septum morphogenesis biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 2722 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 3039 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 3047 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 3136 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 6443 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 429722 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 532429 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 720829 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 734382 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 886926 28468948 ~ 28471765 (+) True G72336
XM_034303993.1 mRNA upstream 16020 27534676 ~ 27546129 (+) True ap2m1a
XM_026936183.2 mRNA upstream 44945 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935807.2 mRNA upstream 53950 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA upstream 53950 27495848 ~ 27508199 (+) False abi1b
XM_034303667.1 mRNA upstream 84476 27468283 ~ 27477673 (+) True zgc:55943
XM_026936880.2 mRNA downstream 46426 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 66792 27648814 ~ 27698656 (+) True arhgap21b
XM_034303531.1 mRNA downstream 66792 27648814 ~ 27698656 (+) False arhgap21b
XM_034303532.1 mRNA downstream 66792 27648814 ~ 27698656 (+) False arhgap21b
XM_034303535.1 mRNA downstream 66792 27648814 ~ 27698656 (+) False arhgap21b
XR_003404070.2 other upstream 4247 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 5501 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 72824 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 448895 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 898067 26663971 ~ 26664082 (+) True LOC113540735
trnat-ugu_6 other downstream 38583 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 39289 27621311 ~ 27621383 (+) True trnat-ugu_8
TU86406 other downstream 1292334 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 2037971 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 3164109 30746131 ~ 30767132 (+) True G73944

Expression Profile