RNA id: XM_034304071.1


Basic Information

Item Value
RNA id XM_034304071.1
length 5250
RNA type mRNA
GC content 0.46
exon number 24
gene id sec24d
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18221624 ~ 18243797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCACCactgtgcgcatgcgcagaagcAGCAAAATACCCGAGGCCGGTGCCGGGAGTTTGACGTGGCACTCTCGTTAGGCTCGTCTGCGTTCTCAGTAGGCAGCACGCTCGGCGTCATCTCTACCTTACAGGATGAGCCAGCAGGGTTATGTTGCTACGCCTCCGTACTCGCAGGCCCAGGCGGGAATGGGGGGATACCCCACTGCATTCGGGGCTCCCCCTCCACAATCCCATTATGGGCACTATGGAGCTCCACCACAGTCCTTTCCTCCACAACCAACAGGTATGCTCAAACCAGCTGCCTCCTCTCCTTCTGGGATGCCTCCACCACCTGTGTCTAGCCAATATGGATCTCCTATTCAACAAAATGGCGCACACCCACAGAAgtTCCCTCCCACTCCAGCAGTCTCTGCACCTGCCATGTCTCCCTATGGACAACCCCCTCAAAGACCATACCACAGCATGGCTCCGGCCATGCCTCCAACCCAACAAATAGCCAATCAGATGAGTGCTATGAACATTGATGGATATGCCCAAAGCCCTGTGCAATCTCCTCAGTCTTTAGCAGCACCACAGCCGTTCCAAATGTCTCCACCACCAACAATGGGTCATCCACCCATGTCTCCTCCAGGCACTCAGCCTCTCTCGATGGGTACATGTCCACCAATGGCAGCTAGTCCACCCATGAGTGCAGCAGGGCCTCCGCCAATGGGATTGTCTAATTCACGGCCTCACCCTCCTCCACTGAGTGGAGCTGGATTCCAACAGCCACCAGCACCTCAGGGATTTCCTCCTCAGCAGCCAGGATTATATGGAGGACAGATGCCCGGGTCACCGATGACAGGGCCTCAGCCAGGCGCTTTTCCAGGAGGTTTCCCTGGAGGAGCTGCCAACATGGCTGGACCCCCTCAGAAGAAACTCGATCCAGACTCCATACCTAGCACAATACAAGTGATTGAAAGTGACCAGGCTAAGAGAGGTGGTCAGGTCTACACCACGAATATGAGGGGTCAAGTGCCGCCCCTAGTCACGACCAACTTCACTGTTCAGGATCAAGGAAATGCTAGCCCAAGGTTCATTCGTTGCACTACCTACTCATTTCCCTGTACCTCTGACCTTGCCAAGCAGTGGCAAGTGCCTCTGGCGGCCGTCATCAAACCTTTTGCCACAGTGCCCAAAAATGAGACTCCTCTATACATAGTAAATCATGGTGAGACAGGACCCATACAGTGTAACCGCTGTAAGGCCTACATGTGCCCCTTTATGCTCTTCATTGACGGTGGAAGGCGCTTCCAGTGTGGCTTCTGCAATTGTGTTAACGAGGTTCCTGTCCAGTATTTCCAGCACCTGGACCATATGGGCCGAAGAGTGGATGTATATGAAAGACCAGAGCTGTCCCTGGGTTCTTATGAGTTTGCTGCTACGCTGGATTACTGCAGAAACAATAAGCCTCCCAATCCTCCTGCTTATATCTTCATGATCGATGTCTCCTACAACAACATAAAGAGTGGACTTGTCAAACTTATATGTGAGGAACTGAAGTCACTGCTGGAACGACTTCCAAAAGAGGAGGGAGCTGAGAGCTCAGCCATCAGAGTGGGCTTTGTCACCTACAACAAGATCCTGCACTTCTACAATGTGAAGAGTGCACTAGCTCAGCCCCAGATGATGGTGGTCTCTGATGTGGCAGATATGTTTGTGCCCCTTCTGGATGGATTCCTGGTCAGCTTTCAGGAATCACGAGCTGTCATCAACAATCTGTTGAGCCAGATCCCTGACATGTATGCTGACACAAACGAGAGTGAAACTGTTTTTGCTCCAGTTATTCAAGCTGGAGTGGAAGCACTGAAGGCTGCTGAATGCAGTGGAAAGCTCTTCGTCTTCCACTCCTCCCTCCCAACTGCAGAGGCACCTGGGAAGCTGAAGAACAGAGATGACAGGAAGCTGGtgaacacagagaaagaaaagACTCTGTTTCAGTCACAGCGCGGTGTGTATGAGCAGCTGACTAAAGAGTGTGTGAGCCAGGGATGCTGCGTGGACCTCTTCTTGTTCCCTAACCAGTATGTGGACTTGGCCACTATGGGTGacattcccacacacactggCGGCTCAGTTTACAAATATAGCAACTTCCAGGTTCAGACAGATGGTCAGCATTTCCTCAGTGATCTGAGACGAGACGTGGAGAAGTCCATTGGATTTGATGCCATAATGCGTGTTCGAACCAACACAGGTTTCAGGGCCACAGACTTCTTTGGTGCCATCTATATGAACACAACTACAGATGTGGAGATGGCTGCAGTGGACTGTGACAAAGCAGTTACAGTGGAGTTTAAGCATGATGACACACTCAGTGAGGAGGCTGGGGCACTTATACAGTGTGCTGTGCTGTACACCTCCGTCAGTGGACAGAGGCGACTGCGCGTTCACAACCTCAGTCTGAACTGCAGCTCTCAGCTATCTGAGCTCTACAAGAGCTGTGAGACTGATGCACTCATCAACTTCTTTGCCAAGTCAGCATACCATGCTATACTAAGCCAGCCGGTGCGGACGGTGAGGGAGATCTTGGTGAGGCAGACAGCTCATATGCTGGCGTGCTATAGGAAGAACTGTGCTACACCTTCTGCTGCAAGTCAGCTGATCCTGCCGGATGCTATGAAAGTGTTCCCGGTGTACATGAACAGCCTGATGAAGACTCCAGTTCTGGTGGGCAGCACTGAACTCTCTACAGATGACAGGGCTTTCCATAGACTCAGCATCATGTCCATGGGAGTGGAGGAGAGCCAGGTCTTGCTATACCCACAGCTCATTCCAGTGcaCTCCATGGACGTGGCGTGTGATTCGATTCCGGCAGCAGTGCGCTGCTCTGAGGAGCGTTTGAGTGATACAGGTGTGTTTTTGCTGGAGAATGGCCAGTCTATGTTCCTGTGGCTGGGCCAGGCCTGCCCTCCTGACCTCATCCAGAGCCTCTTCAATGTGCCCTCCATGGCCCATCTCAGTTCAGACACGACTACATTGCCTGAACTAGATAACGCTCACTCTAGGAAGCTTCAGTCCATCATTTGTGCCATCTCCCAGCAGCGGTGCAAGTCCATGAAGATGGTGATTGTGAAGCAGAAAGACAGATCAGAGATGCTGTTCCGCCAGCTCCTAGTGGAGGATAAAGGCCTGTATGGAGGAACTTCGTACTTGGAATTCTTGTGCTCGGTTCACCGTGAGATTAGGCAGCTTCTGTcctaacatacacacagactcataTACAGTCACCAGCCCCTTTATTAGAATTTGTACACCTGCTCAATCATggaattatccagtcagccaatcatgtgtcagcagcgcaatgcagaaaatcataaaataatatcaagactggtttgagctgacaggaaggctacagtaattcaGGTAACTACTTTTAAAACCGTAGTGAGCAGTAAAgtatctcagaacacacaacacagcgaACCAtgaggaggatgggctacaactgCAGAAGTGCAGAACTGCAGAACATCGGGTTCCATgcctgtcaaccaagaacaggaatctgaggctacagtgagcacagtctcAATGAGACTGGAcaattgaagactggaaaaacttTGCCTAGACTGATTAATGTCAATTTCTGCTGAGATATGCAGACGGTACGGTCAGAATTGGGCATCAAGAGCATGAATCCATAGACCTAGCTTGCGTTGTGTCAACAGTTCGGgcgggtggtggtggtgtaatagTGTGGGGAATATTTTATTGGCACATATTGGGCCCCTTTAATACCAATCAAACATCagttgaatgccacagcctatctgcTATTGTTGCtcaccatgtgcatccctttataGCCAGAATTTACCTATCTTATAATGGCtaattccagcatgataatgggccatgtcacaaagcacaagtcatctcaaactggtgacatgaacatgaacatgagttcagtgtacttcaatgGCTTCCCTAGTCACTGGACCTGAATCTGATGGAGCATCTTCAGGATATGGTGAAACAAGAGATTCACAGCCTGAATGTTCAGCAGAAAATTGTTATGCAATCATGTcgacatggaccagaatctcaaaggaatgtttccaacaacTGGAAACCATACTAAAAAGAATACATAATGTTGAAAGAGCAGGGGATTTAGTAAGGattagtatggtgttcctaataaagtggttggtgagtgtatagACAGAGTGTGTGCAAGGCAGCACACATGATGAACTTCTTACTATTTCCAGAGCTGCCTTTGAATGACTGTACAACTCCATCAGGACTTCACAAGTGTTCTTATTTTGTCAGTTTCACTCAAAATTCTAGTTTGGGATTAAGCTTGGCTTGCTTTTATGTAATGGTATGTATTAATGTCTCCTAATAtatacaatctttttttttctttagataaCATAAAAAAAGGAGAGGATTCGCAAATTCCCCATTATTTgccaaattaaaaattacaataaaaaaattgttttattaaaatggtaCCAAAGAATGAGAAAAGTTTTAGTCTGTGTTAAAAAAACACCCTCATTAAATCAGGCCTTTTCTGCATATACAGGAAATGCTGTCTATTAAATTCATAGATTAAATCATTGGATACCATTAGAAATATTAGAAGCATTAGAATGGACTAACTGAAATTAATTAAACTTCAattatattaaatgatatttattcaCAAAAACTATGAGAAATTGTTTCACGCATAACCCTTTGTATTCCTGATTCTGTGGCATTTTTTGTCTTGGTCATACATGCTGTAAATttgtacacagtgaaacatttattttgagtGTTTAGCAGTTTACTGTATAATCCAAGAAAcaaatcatatacagtataaggcATCTTTTGTACATGAGCTGTTATCTTTCCATGCTCACAGAAATTGCTTCATGGGCATCAAAGTAAATTGAAAAAGTTTTTCATATTCAGTATaccttaatattttttattggtatattacatcatatattttattacttctgtgatgtatttgaaaaataatagcTTACATGTAAACATACCTCAGGTAACGCATGTGGAGAGGTACATGTTTACAACTGCTTACAGTAGCTTACAATGTGGAAGTAGatgaactttttaaatttttgaatGTTGGGCCCATTGGTTGAGATAAGGATGCTGTGCCATATACATTCCAGTTTATAAACATCCAGTACAAAactttttgattaaaaatagtCTTCATTGAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0070278 extracellular matrix constituent secretion biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78810 lncRNA upstream 43982 18177234 ~ 18177642 (+) True G66452
TU78778 lncRNA upstream 109709 18111685 ~ 18111915 (+) True G66426
TU78533 lncRNA upstream 125041 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 229377 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 246265 17973998 ~ 17975359 (+) True G66186
TU79006 lncRNA downstream 138159 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 186765 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 247575 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 425245 18669042 ~ 18669250 (+) True G66754
TU79242 lncRNA downstream 584382 18828179 ~ 18833827 (+) True G66855
XM_034303317.1 mRNA upstream 77993 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA upstream 77993 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA upstream 77993 18113473 ~ 18143631 (+) False frem1a
XM_026936697.2 mRNA upstream 139194 18049289 ~ 18082430 (+) True rap1gds1
XM_026936698.2 mRNA upstream 139194 18049289 ~ 18082430 (+) False rap1gds1
XM_026936118.2 mRNA downstream 182561 18426358 ~ 18430359 (+) True gba3
XM_026936168.2 mRNA downstream 605368 18849165 ~ 18851580 (+) True sod3a
XM_034303649.1 mRNA downstream 707250 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 926902 19170699 ~ 19327377 (+) False LOC113540597
XM_026937175.2 mRNA downstream 926902 19170699 ~ 19327377 (+) True LOC113540597
TU78855 other upstream 13060 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 91119 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 210662 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 457090 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 601545 17609704 ~ 17620079 (+) True LOC113539940
TU79253 other downstream 612659 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1584514 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1585022 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1857228 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 1903998 20147795 ~ 20154771 (+) False fcer1g

Expression Profile