RNA id: XM_034304107.1


Basic Information

Item Value
RNA id XM_034304107.1
length 3269
RNA type mRNA
GC content 0.51
exon number 15
gene id tbc1d14
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2115603 ~ 2168651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGCCGCAGCGGAGCAGGTAACGCGACCTGTTTAATCTTCCCTCCCGGCAGCTTCACAGCAGCTCAGGCGGCGCTGGAGGAGTAAAAGCAGACCAGTGCGGGTTTCTTTGTCGGACCGTGTCAGTAGAAGtcgctgaagtgtgtgtgagagtgtgtgagagtgtgtttgaggTGAAGCAGGAACAGAACTGCAGAGATGAGTGAAGTTGAATGTGAACGGAAGTGAACTTTATATTTCACATCATCACTGCAGCCGCGCGCTGTTTATGAGCGCGCATTAGAGCGTTATTAACGCCACGTGATGCAGTTATTCAGAGTGCACTTTTTCCTCCTGCTCTGAAGTTCATGccgggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagagaagcgccgagtctgagagagagaggaagtgaggaaggtgctgtctgtccatcatcttcatcatcatcatcatcatcatcttcatcatcatcatcatcatcatcatggacATGCACATAAGATGTGTACAAGTGTTATAAAGCAACACAACACGGAAGAAGGGATGGACACGAGGACAAACCCGGAtggaaaagCGTTTCACGCCGCTGAAAACGGCTCTGTCTTCGGACCCCACGCTCCAGATCTccttcacagtgtgtgtgtgagctccaCGCCGCTGTACTGCCGCTCCGCTTCCGGCTCAGCCTCGCTGCACAGCGCCCCCTGTGGCGAGGAGGAGCAGCACAGCGTGGACTCGCAGGACTCGGGCATCCCGACACTGGAGCTCAGCTCACCCGATGTGACAGAAGAGTCGCACGGCACCGAGCCGTTAAGTCTGAGACACCAAGACGCTCCGGCCACGCTGAAGCTAGAGACGATAGGCGAGGGCGGAGCTTCGAGTCAGGTCAGGGGTAGAGCTTTGAGCTATCGAGACTCCACCTCTGTGTGCAGCACCTCCAGTCTGAGCACGGACTTCTCGGCTACGCTGTCTCTCGGCAACGACGACATCGCTGGTGACTTCGTGGTGACATCGGACTCGAGTGCCGTCGTCGATTTTCACGATTTTAACAACTTCTCTCGGTTCCCCCAAACTCCGCCCATAAATAGCGTACACAGAGACCATCCACTGCAGCACCATGACGAGGTAGCGGCGAAGAAAGAGAGTCCGATTGTGAACTTCTTCAACAGGAGTCTGTTCTCTAAGAAGGTGAGCGACGCTGGAGATCCGAACGCTCACTCTGAGCCGAGCTGGAGGCTGTTTGGCAGAAGTTCACTCAGACAGACCCAAAGGGTTTTAAAGgaaaaTGAAAAGGCCGGTGGTTCTGTATCTCCCAGACAATGCGTGAGGAAACACCTGGAGTTTGAGCCTCTCTCCACCACTGCTCTCATACTGGAACACCGACCTGCgaatCTCCCAGCGAAGCCGGCAGAAGAAGCtcagaaacacaaacagcagTATGAAGAGATGGTGGCTCAGGCCAAGAAGcgagagCTAAAGGAGGCTCAGAAGAAGAGGAGGCAGTTGGAGGAGAGAGTGCGATTAGAGGAGAGTATCGGCAACGCAGCGCTCACCTGGAGTCAAGAGATCCTGCCAAACTGGCACAAcgtgcgCAGCTCTAAGCGAGTGAGGGATTTGTGGTGGCAGGGAATCCCCCCGAGTGTGAGAGGACGAGTGTGGAGCCTCGCTATAGGCAACGAGCTCAACATCACAcacgAGCTGTACGATATCTGTTTGGCGAGAGCGAAGGAGAAGTGGAGCGCTGCGCCTTCATCAGTCACCACAACAGAAAACGACACAGGAGATGCGGGTTCGTCTCAGGCCGATCGCGAGGCGAGTTTAGAGCTGATCAAGTTGGACATTTCCAGAACTTTCCCCAGCCTCTGCATATTCCAGAAGGGAGGCCCTTATCATGATGTGCTGCACAGCATTCTGGGAGCTTACACCTGTTACCGGCCTGACGTGGGATATgtacaGGGGATGTCGTTCATTGCTGCAGTGTTGATCTTGAACATGAACACCGCCGATGCCTTCATCGCTTTTGCCAACCTGCTGAACAAACCATGTCAGATGGCTTTCTACAGAGTGGACCATAGCCTTATGCTGACGTACTTTGCTGCATTTGAGGTGTTTTTTGAAGAAAACCTACCAAAGCTATTTGCACATTTCAAGTGTAACAACTTGACACCTGACATTTATCTCATTGACTGgatctTCACCCTGTACAGTAAGTCTCTGCCACTGGACATTGCGTGTCGTGTGTGGGACGTATTTTGTCGAGACAGCGAGGAGTTTCTCTTCCGCACGGCTCTCGGGATCCTGCGTTTCTATGGCGACGTCCTCACGCACATGGACTTCATCCATATGGCGCAGTTCCTGACGCGGCTGCCGGAGCagatctccacacacacacagtcgcacACACTCTTCTCCTGCATCAGCAGCATCAACATGAGCTGCAGGAACAGGACATGGACACAGGTGCTCCAGGCTCTGCAGAAAGAGACGGAACATTCCAGTCCCGTGCTGAAACATTGATGAATTACACACTCGCATGGAGGCTagaatagagtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgttgaagctaAACCCTAAGACTCAGGACCTCTGTTTGTGTAATTCAGACTCCtggaaatgaacattttttcgGGAATGAAGAACGAATGCATCAGCATGcagtatacaaacacacacacacacacacacacagctgggaTTCGGACACAGCCAGCCAAACGTCTGCTGATGTTTCCTGAACCTCTGTGTCAGGCGCCAGAGGTGAGAAAgagctctgtgattggctgctccGGAGAAGAGAACCAACCaattgaccaatcagagcgttGGAACGGTAGCTAGGTTAGTTTATGTGATGAAAACCACATACTACTGCACTAAATAGTAAGTTACAATAGTAATAGGCACTATaggtactttttattttaaagagagAGTTATTTCCTACCATGCATTGCACCTACGTGGCTGGTTGGCACTAACGTCAGATCTACTAGTCTACTCCAGTCTACTATGGACAGAAAAAGTCAAATCTGCTGTCATCCCTCTGTTCATCCATCTCTTAATTTTTTGTGTTCTGTATGTATACACTAAAgggtcaaaagtatgtgcacccctgaccatcacccccatatgtggttcttccccaaagttggaaacacacacttgtatagaatgtctttgtatgttgtagcattacag

Function

GO: NA

KEGG:

id description
K20167 TBC1D14; TBC1 domain family member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69296 lncRNA downstream 11592 2071024 ~ 2104011 (-) False G58534
TU69298 lncRNA downstream 11592 2099576 ~ 2104011 (-) False G58534
TU69294 lncRNA downstream 14905 2071024 ~ 2100698 (-) False G58534
TU69297 lncRNA downstream 14905 2071024 ~ 2100698 (-) False G58534
TU69301 lncRNA downstream 14905 2071024 ~ 2100698 (-) False G58534
XR_004578088.1 lncRNA upstream 59595 2228246 ~ 2230981 (-) True LOC117597186
TU69364 lncRNA upstream 99541 2268192 ~ 2274161 (-) True G58585
TU69374 lncRNA upstream 180068 2348719 ~ 2826890 (-) True G58594
TU69378 lncRNA upstream 207942 2376593 ~ 2402304 (-) True G58598
TU69409 lncRNA upstream 366464 2535115 ~ 2567804 (-) True G58628
XM_034304120.1 mRNA downstream 33847 2057472 ~ 2081756 (-) True LOC113524117
XM_026910248.2 mRNA downstream 41089 2071011 ~ 2074514 (-) False LOC113524116
XM_034304117.1 mRNA downstream 41451 2071011 ~ 2074152 (-) False LOC113524116
XM_034304118.1 mRNA downstream 41451 2071011 ~ 2074152 (-) True LOC113524116
XM_034304121.1 mRNA downstream 58887 2045162 ~ 2056716 (-) True LOC113524112
XM_026910084.2 mRNA upstream 6889 2175540 ~ 2192893 (-) True kiaa0232
XM_026910091.2 mRNA upstream 36138 2204789 ~ 2212601 (-) True LOC113523983
XM_026910111.2 mRNA upstream 116036 2284687 ~ 2348344 (-) False greb1l
XM_026910112.2 mRNA upstream 116036 2284687 ~ 2321069 (-) False greb1l
XM_026910110.2 mRNA upstream 116036 2284687 ~ 2321069 (-) True greb1l
TU69291 other downstream 31674 2071024 ~ 2083929 (-) False G58534
trnav-cac_1 other downstream 115553 1999978 ~ 2000050 (-) True trnav-cac_1
TU68836 other downstream 422606 1692326 ~ 1692997 (-) True G58190
TU68413 other downstream 1066762 1041777 ~ 1048841 (-) False G57868
TU68216 other downstream 1258651 839432 ~ 856952 (-) False G57733
TU69336 other upstream 35901 2204552 ~ 2222099 (-) False LOC113523983
trnag-ucc_1 other upstream 489352 2658003 ~ 2658074 (-) True trnag-ucc_1
trnag-ucc_2 other upstream 498116 2666767 ~ 2666838 (-) True trnag-ucc_2
trnag-ucc_3 other upstream 503249 2671900 ~ 2671971 (-) True trnag-ucc_3
trnag-ucc_4 other upstream 507319 2675970 ~ 2676041 (-) False trnag-ucc_4

Expression Profile