RNA id: XM_034304126.1


Basic Information

Item Value
RNA id XM_034304126.1
length 4614
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC113526634
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7049124 ~ 7082000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AtaatggtgtgatgaagctgcaCTCACGCTCCGCCCACATTCAGGACGCAAAGCAGAGAGCTCCAGCTgcagcactcacacacacacaccaacactcacactcacacatcctgctgcttttgtggATTACTGTTTTGATGGCGACATTTCTGACTTTCTGTATTTTAATGACCACGTTTTGTACTACTGTAATCTGGGTTGAAGCTGATAAAGGAGAGCTGCGAACGCTCCATCGACAGAAAAGAGAATGGATCGTCCCTCCGAATAAGCTGTACGAGAATGTGGATTATACCAGAAATGAATTTATTGCAAAAATCCGATCAGATGAAGAGACCAGGACGGATATTGTATATTCTCTAATAGGACCTGCAGCGGACGAGGGATTATTCAGCGTAGGTGCAAAGAATGGCTACGTCAGGATTCATGGCATCTTGGACAGAGAGAAAACCGCTAGTTATGACCTCAAAGGGAGAGCTATGCTAAGAAATGGATCACTTGCTGAAAAGGACATCGAGTTGAAAATCATAGTTCTAGACAAGAATGACTGGGTCCCTGTGTTTAATGTTCGGGTGAATGGCTCTgttgaagagctcagtgacaaAGACACCCACGTAATTGAAATCAAAGCTTTCGATGGAGATGAGCAAGACACACTGTATTCAAAAATTGCCTACAGAATTATACAGCAGGAGCCAGCTGGAGAGATGATGTTCAAAATCGAGCGATCATCTGGTCAAATCAAAGTCAGAATGAACACTCTGGACCGAGAGAGCCAAGAAACTTACAAACTGATAATCATGGGTACAGACATGGACGGAGTCAATTCCGATCCCCAAAACAAACCACTGACAGGAACAGGGACTGTGACCATCAACATACTTGATGTCAATGATAACATCCCGATATTAGAGAAGGACTCTTACGAGAGTAGTGTGGAAGAGAATATCAAGAATGTGGAAGCAGTCCGGCTTAAGGTCATAGACAAGGATAAGCCCCACACTGAGAACTGGGAGGCTGTGTTCACCATCATTTCTGGAAATGAGGCCGGTCACTTCAAAATCACCACAGACCCCAAAACTAACGAGGGCATCCTGATAGTCACTAAGGAGCTGAACTATGAGTGGTTGAACGAGGTCAATCTGACAGTGTTGGTCAGGAACAAGGCAACTTATCACAAGTCAGTGGTGACTGACAAGCCCATAACATATCCCATTAATATCAAAGTGGTGAACGTGCCCGAAGCCCCTCATTTCCACCCCACCGTGAAAGTTATCTCCATTTCTGAAGACCACAAAACTATTGACCTGAAGAAGGTCATCACCACCTACACAGCCACGGACAGTGATACACTGTTAACCGCCAGTTGTAGGTATGTTAAAGGAGATGATGTTGACAACTGGGTGAGCATTAATGAGCAAACAGCCGAGATCAGATTCAACAGATATCCAGACCGCGAGTCCAAGTTCCTGATCAATGGAACATACTACGCCAAAATCTTATGCATCACCAGTGATTTTTCACCCAAAACTGCGACAGGAACTCTTGCAATTCAGGTGCATGATTTTAACGACCACTGTCCGATTCTGACCAGCTCAGTCCAAACACTGAGCTACGGTGACAGCGTAGTGTACGTCACAGCCAAGGATGAGGATAAATACCCCAATGCAGATCCTTTTGAATTCAGAATGATTACCAAGAGCACAAAAGAGAACTGGAGAGTCGAGCGTCTCAATGGAACAACAATCATCTTGCGCAGCCAGGAGATCCTGTGGCCGGGACACTACACAGTGGGACTGGAGGTGCAAGACCAGCAGGGAAAGTCCTGCGAGGTTCAAAAGCTTCAGGTAGCTGTGCTGACTGAGAGACAGACCAGCAAAGGCATTGGACTGGGAGGAGGTGGAGTTCTGGCACTACTGCTAGGAATCCTGCTTCTCTTGTTGATTCCAGTGCTTTTGCtgttgtgtgagtgtggagGAGCTGCAGCTCTTGGTAGTTTCCAGGCCTTCCCCTTCGAACAAAATCAGGAGCTCATCAGCTATCACACTGAAGGCCAAGGAGAGGATAAGGAACCAGCACTGCTGTCCCAGGTGCCCCTGAATGTAAACGGTGGCAGCAGCATGAAAGTGGGAACTGGATGGAGAACACATGAAGGCTCAAGGAAATATGGATGGGAATCTCAGAAGGAATTCATAAATCAGTGGCATGTCAACCAGTATGAGGGTGACTATGCTGATAAAAAGGCAAATGTAATTGGGggaaattctgaattttttacAATGAGCACCCTCGATTACATGGCTCTGCCTGAGACCTACTTAGGCAACTACTATACGAAGAAAACGCTGGATATGGTGAAGCAGGAAGCTAGTACAAACCAGCTGATGTTGTCTAACTATGAAGTCTGCAACTCAGTCACAGGCTCCTTAGAGGACATCTGCAGCCATCTACATGAGGAAAACAATCTGGATTTCCTCGATGACCTCGGGCCTCAGTTCAAAAGGCTCGCTGAAATTTGCTGTGGGTCGACCATCGAATTCGAGGTCAGCTCCACTCCCACGCCTCCCAAAACGGTCTCATCCAGTTCACAAGTGGGCATCAAAGTGCAAGGTGCTGTTGGTGGTGTCCACAGTGAGGCAACCTCCATCTCTGCATCcagctcctcctccaccacccaAATCACAACTGCAAATTATGGAGAGAGTATTATCAGTGGAGGCGCCACATCAGCAGCCACTGTAGGCCAAACTCTTCTCGTCCAGCAGCCATCTGTCTACCTTTCCTCTACACCCATGTACGTAGTGGAGCAACAGCATCACCCCACCCTTCTTCTGGCTTCTGGTCCAATGCTGGGTGTTCAGAAAAGCAACATGGTACTGGTGGAGAAAGGGGGTACCAACATGGCAATCGCTGCCCAGAACACCCTTCCCAGGCTAGGGTTGCAGCAATCAAACACCAGAGTACTGGTGGATCCAGGTATTGGAGGCACAGTGGTGCATGGGTTTCCAGGCCAACCTGAGACTCAGGGCACCATTTCTGGTACCTATCGGGTCGTAGAGAGCCGACGAGTTGAGAGCACGGAGCCTGTAGGTGTCATGCAGAGCTCCTCACACTCCAGCACCAGCAAAAATCAGAGTATGCAGGCCAAAGAGCAAAGTGGAGGGATCATGGCTTTAGGAAACGCATCAGATATCCCAAGTGCCATTTCATTGTTGCAGCAAGACATGCCTCAATTTGATGTGCCAAATGGTGGCACTCACAAAGAGGTGCGAGAGGAAAGGGTTTCGGTTGTTGAGAAAAGTTTCCAGTCGAGCTCCAGCTCCTAATGCAactacaaacacactcacacattctaCATGCACAGCCTTATTTTCATGAATTCAGCTATTAGTTCTGTGAAGAATATCCCATAGAACTGACTGATCAGAAGAGCAAGTTTGCTCCTAACAAAGAGAAACCTGAACACTTTCTGAAGAtccattaattaattcatagtGAAGGGCATGAGTAGTCAATTAATTGAGTACATCTTATGTAGCCTCataatcaattaataaaatattacccatataaatcatatttttatggGACTAGTGTCTCTGGGTGGCATTTTTCCATCTCTTccattataaatctggaatccAGAGTTCATACAAACTGGATGTTTGCAAAACGTGtggtcatgttttgttttatatgcaTTAGTTATTTTAATACAGAGAACACTGTTGGGCCTGCAGGATCACTGATTTGTTGATTTTGCAATGTGGAGATGTTTTTCAGATAGCAAAAGACAACTTCTATAAAATAACCAGTAAAATTATCAGACAAATGCACAGTTTATCAAAAAAACAGTCGGTAATTTGGTCTGTAATGTTCcatggagaagagagagagagcatgaaagCAGCACAGCTTTCACTTTTTATGGTTTTTGCAGTACGAATGCATAACACTATTATTCTATTATAgttataatgtttttgttattagCATAAATTGATGCTGCtgagtaaaacaaaataatgtcaGGCTGTTTGTTATAAAATTTAATCAGTACTGGGTAACTAGGAGATTGTTTGTATGGGAAAGTGTGTTTGAGTATTCAGCTAGAATGTCCATCACTAACAATTAGCATTATAGGATAGGCTTTTTAGGAGGTTTTGACATACTGGTGTGCATTTCATGTAACAGAGATGGGTTTCTAAACAACATATGTATCATCAGTTTATTTCTATCTTCAGAtagcattttttgtttgtttgtttctctgttaCGTTTTTCATTTCTAAGCCAATAATGGAAATAGAGTGCACAGCATTTCCCTCATATTACTATATTTTCATTATGAAAGCGTTCaactggaataaaacactagaattaaaacaaaattcatCTAAGTGTGACCAGGGCTCTACGGGTGACTAAAACACTCTAAATTGTGCAAGGATTGTGCGCTGTTGATACAAGAACTGGGTGAATTTGTGCTGTAAGACTGATAAAAATCTCTTAATGTCCTGGAATAAACTGAAAGCCATCATCTGTGTCTTCTTTAGGATTTGAAACCAGTTTTTCAACCCCAGACAGAAACTTTCCCTCCctaacctgttttttttt

Function

GO: NA

KEGG:

id description
K07597 DSG2; desmoglein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71790 lncRNA downstream 167789 6878644 ~ 6881335 (-) True G60669
TU71799 lncRNA downstream 256172 6785327 ~ 6792952 (-) True G60672
TU71581 lncRNA downstream 406939 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 446898 6587543 ~ 6602226 (-) False LOC113547257
TU71867 lncRNA upstream 148654 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 160125 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 359262 7441262 ~ 7538818 (-) True G60846
TU72015 lncRNA upstream 401121 7483121 ~ 7483703 (-) True G60852
TU71992 lncRNA upstream 413402 7495402 ~ 7500703 (-) True G60830
XM_026914035.2 mRNA downstream 6335 7021733 ~ 7042789 (-) True prkacbb
XM_026914102.2 mRNA downstream 30847 7015028 ~ 7018277 (-) True exosc4
XM_026914411.2 mRNA downstream 53664 6989280 ~ 6995460 (-) True LOC113526956
XM_034303444.1 mRNA downstream 90045 6956772 ~ 6959079 (-) True LOC113526837
XM_034303609.1 mRNA downstream 136551 6869370 ~ 6912573 (-) True LOC117597068
XM_034303902.1 mRNA upstream 13820 7095820 ~ 7118074 (-) True dsg2l
XM_034303903.1 mRNA upstream 13820 7095820 ~ 7108967 (-) False dsg2l
XM_026913631.2 mRNA upstream 614900 7696900 ~ 7727146 (-) True LOC113526521
XM_034303614.1 mRNA upstream 729655 7811655 ~ 7918897 (-) True si:ch211-241e1.3
XM_026913409.2 mRNA upstream 983202 8065202 ~ 8078853 (-) True rpe65a
TU71817 other downstream 149897 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 605309 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 868165 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 1089579 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 1118925 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 1493506 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 1901234 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2232849 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2255826 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 2444574 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile