RNA id: XM_034304138.1


Basic Information

Item Value
RNA id XM_034304138.1
length 3786
RNA type mRNA
GC content 0.44
exon number 10
gene id ro60
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28276696 ~ 28286658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGGACAGGATACGACACTTTGGAGTCGACTCTGAACTCCTAGTGCTTTGGTTCGAAGAATCGACTCTTCCTAGGATCCCTACTTCTTCCAGACTTTGGCTAACGACCTCGGAGGAAGCACCGCTATGGATTCGTCATCTCTACCAgagcaggaaacaggaaactgCACGAGTGAAACAGGAAGCGTGCCAGCCGTGACGGAGGAAGTTCGCCTGCGCCGCTTCCTCTGCTACGGCTCAGAGAGCGCCACCTACAGAGCACGCGAGCAGAGGAACCTGTGCCTTGAGCGGGCCTCGTCCGTAACTGAGCTGCTCGCGGCCGGCCGAGGCGGCGAGGCGGTGCAGGAGGTGCGGAGCATGAGTCTGAGGGGCGGAGTCAGAAGCCCAGGCCCCGCCCTGTTCGCCCTGGCCGTGATCTCGCAGCACTCGGATGTGGAGGCCAAGCGGGCGGCGTATGGCGTGCTCAAAGAGGTGTGCACTTCCCCGAGTGAGCTTTTCAGCTTTGTTCAGTATAAGAAGGAGCTGAGCGGCGCGGGGCAGCGCGGCATGTGGGGTCGAGCGCTGAGGAAAGCCGTGGCAGACTGGTACAACGGACGCGACGCTCTCAGACTGGCACACGACGTCACCAAGTGTAAAAGGAAAGGAGGCTGGTCTCATCAGGACCTGTTCCGACTGGCGCATCTGAAGCCTGCCAATGATGCCGTTGCTCTGGTGAGTAAATACGTGACTAAAGGCTGGAAGGCGGTGCAGGAGACGTacgcagacagagagaagacgGAGGATGTGATGAAGGTGTTTGTGTATCTGGAGGCCGTGGAGAAGACCAAACACTCGAGTGATGAGCTGGAGGTGGCGCATCTGGTGGAGGAACACAAACTGGAGAGAGAACATGTCCTCACTAAACACCTGAAGTCCCGAGAGGTGTGGAAAGCTCTGCTGAAGGAGATGTCCGTCTCCACACTGCTCACACATCTGGGGAAAATGACCGCGGATAAACTCCTGGGCCCGGGAAGTCCAGACACGGCGGCCGTGTGTGAGAGGATTCAGGATGAACACGCTCTACAgaagGCCAAAACTCATCCGCTTAGTGTCCTGCTGGCGGCTGAGAACTACAAGCGAGGTCACGGCAAGAGAGGGAAGTTAAAATGGAAGCCGAACAGAGACATCATTCAAGCGCTAGACTCCGCCTTCTGCAAATGTCTCTCAAACGTCGAGTCTACGGGGAAGCGCTTCGTAGTTGGAGTGGACGTGAGCTCTCGACTCGGCAGCGTTGCTCTCGGCAGCCTCGTCAGTACAGTGACCGTAGCTGCAGCCATGAGCATGgtGATCACACGGAGTGAACCGAATTCTGATGTCTTGCTGTTTTCAGAAGGAGCTGTTGTTCCCTGCTCCATCTCAGCCGATTCATCTCTCCTCCAAATAACCATGCAGTTAGTGCAGGTGTGCAGTAGCTATACAGACTGCACTCTGCCTATAACCTGGGCCTcggaaaatgacaaaatggtggACGTGTTTGTTATTTTCACCAATAATGAAACCTGGCCTGGGAGGTCAAATCCAGCGGAAACACTCAGGACATACAGACAGaaaactggCATACTTTCGAAGCTGATTGTATGCGGCATGACGACAAACAGCCTTAACGTGGTCGATCCGGACGATCAGGGCATGCTGGACATCTGCGGGTTCGACTCGCACACCGTCAGCGTCATCCGCGACTTCATCATGGACGTCATATGAGAGAGGTGCACCATGGGAAACGCACGACGCTAAAAGCAAAGCTACAccgaaaaaaaagaaagcaagaaatgaaatgttcatgtgtttctgttttttctgtaatgtCCAGCAGGCTGGATGGAGATTTTACTCggaaacacagagaacacacagcTAACTTCATTATGCCGCTTTAAAGCTATAACACTACATTcgattttataaaaaaatatatatatttttgctattGGAAAGTTCCTGGATGTAGTCATGTGACGATAGCATTTTTTGGCAGCATGCtaaagttgttaaaaaaaaatctactttttaGCTAAACTAGGAAGCTAACGACTGATTGTgcgtaaataaattaaaagtcgTTAAGATGATCATGTATTCTGAACGAGACGCTGTTGAGGttcatttaaagttaaaattgaATGATGCAGccggatttaaaaaatataataataataataataataataataacaatagtaacaataataataataatatcattactTGTGATAGTTTACACAAGTATTGAATTTTatatctgtaatttttttagtcCTTTATATAAGGCtaactagcatgtttttttttccccaaccatATGAAGAAAAACTTCTCTGAATTTAATAATCTAATAACGGAAATTTACGCAAAAAAATATTAACGTGTACATTTGCCTgctaaaacaagaaaaaaaaaattctgacagtAGTTAGCATTAAATGTTGTTTGAATTGAATGCCCTGAAATGTccactttatatttaaaaaaaattctttcgaTGATTAGTTTTTGCTGATagttattagatttttttattattattattttaacgtTACTGAATTTATTTAAGACACGTGTTTTTGAGTTTACGATATCAGTGCACTTTTTCATCTATTTCATGTGATAGGCATTTCTTGGTCGGAATGGGCGGAGCTTACATTGTGTTCAACCAGCCAATTGCAAACTTGCAATCATATGACATCactagcttttatttttagtttcttCAGATGGAAGTAGCACTTTACTGGAAAATGTTGTTTTACTTACGCGATTTAAATCTCATAATTATCAACTGAAGCAACTGtgctaacattagccagctTTGTGTTTAGTTATCGAACATTATCGTCGACTTTCTTGATATAAAGATGTTACATAGCTAGCTGTCAAATTCTCGACAAAGCTAACTAAgtagctattttttaaaattttgtgtcTCAGATTTATGGTAAATTCCTGACATTCCTGAGCTAAATTTATGCTATGATGATCAGGCATGATCAGGTTTGTGATTGCAAGTTtaacttaagctccgccccttttgaCTGCGGGAATGTCAAATGTCAGTGTGGGAACATTTACGTGTATTTACATTGATTACTATTTAGCGTTTTTATTTAGACCAAAGTTTGACATCATTAACTAATAATGAGTGAGATCTAATATAGCTGCTAATTAGCTGTTATGCTAGCAACCGTGTGCTGATCAATGGCTggaagttttctttctttctctgagtTCCGATACGGTTTTTAACCCGCTCTCAGAATCTTATGCTACCTAGCTAACTAGATAACTAGCTAAAGTGCTAATTAGCCGAGTTGTTAAGTAGCTAGTGTAAACAGAATTATCACCAATTTTGAAATTGAAATGCTCCAGTTTACACTTCTTTTAAAGTGATGTCGACGCACTCTTGTCGAGGGGAAGTTGACGAGGGTGCGTGAGTGAAGagtattggaacacagccgTTGTTAGCTACAGTAGCACTTTAGTTTCAAGACCTTTAATCTGAATCGTGAGGTTTCTGATTGTTCAAGATAATTAACACTAGAACAACGATTTCTCCGCTGAAAAGAGAAGATGGGCGTTCTGACGGACGTGTGGAGTTCATTGGTTTCATCAGAAATAAAACGTACGCACTGTGATTGCTGTAACTGTGGAGCTTTGTGCTTTGTACCTCTCCTTTAAGTCCACACTGCGTTGGCAGTGAATCACTGTAGCCCACACCGCAACGCCTGGAACTCCTACcacttaataaatta

Function

GO: NA

KEGG:

id description
K11089 TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86171 lncRNA downstream 76887 28197991 ~ 28199809 (-) False LOC117597043
TU86175 lncRNA downstream 76887 28199219 ~ 28199809 (-) False LOC117597043
TU86125 lncRNA downstream 131830 28104546 ~ 28144866 (-) False G72658
TU86202 lncRNA upstream 56476 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA upstream 78999 28365657 ~ 28379132 (-) True G72720
TU86223 lncRNA upstream 111003 28397661 ~ 28471771 (-) True G72726
TU86306 lncRNA upstream 380665 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 426376 28713034 ~ 28717955 (-) True LOC117597077
XM_034303645.1 mRNA downstream 1381 28238896 ~ 28275315 (-) True cdc73
XM_034303546.1 mRNA downstream 51093 28198023 ~ 28225603 (-) True LOC117597043
XM_034303542.1 mRNA downstream 80639 28173321 ~ 28196057 (-) True LOC113540124
XM_034303543.1 mRNA downstream 80639 28174936 ~ 28196057 (-) False LOC113540124
XM_034303545.1 mRNA downstream 105715 28157829 ~ 28170981 (-) False LOC113540126
XM_026936156.2 mRNA upstream 189773 28476431 ~ 28491847 (-) True shha
XM_034303284.1 mRNA upstream 288250 28574908 ~ 28605243 (-) True lmbr1
XM_034303285.1 mRNA upstream 288250 28574908 ~ 28605242 (-) False lmbr1
XM_026936574.2 mRNA upstream 324533 28611191 ~ 28619112 (-) True LOC113540234
XM_026936572.2 mRNA upstream 333158 28619816 ~ 28628143 (-) False LOC113540232
trnas-uga_2 other downstream 39891 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 40429 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 234911 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 651888 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 655568 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578096.1 other upstream 361666 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 586920 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 586922 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 595669 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 861980 29148638 ~ 29152381 (-) False usp33

Expression Profile