RNA id: XM_034304141.1


Basic Information

Item Value
RNA id XM_034304141.1
length 2318
RNA type mRNA
GC content 0.54
exon number 4
gene id dipk2aa
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29300306 ~ 29322917 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTCCGAGGTGTCGTGACTCGTAAGTGCGAAGCCGGAGCGGACAGAGTCggagcttctttttttttttcttcttcccgtGGAGCTtttgagtaaaataaaatacttttttaaaaaaagaaagaaaggaagggatGGCAGTGGGAGTGTAAGTTGGGGAGACAGAGGTGTTTTTCACTCAGTGAGAGGAGTAAAGCAGGATTTCCGCTGAGAGGCGCGTGAAGCGAGAAGCGCGAGGCGATGAGAGAAGCAGCGGAGTTGATGAATCGCTTGCGGAGTCGTTTGGTGTgTAAAGGCGACTCCCAAGAAGGATGCCCAATGCTAAAGTGTGAATTAAATCCTGAGCATCAGACATGGGGACAGAGCTTCTTGAGGCTAATGGCATGAATCAAAGGCCTCACTGCCAACATGGATCATTATAGGTGACGAAAGCTGATGATGAAGCATGTAACAGCAAGAAGTTTGGGACAGTGGCATTGAGGAAGACTGAACTGCACCGATCCTCCTCGTGCCACTGCTAGTCAGCATGTTGCGCTTGCTTTCGCTGAAGCTCGCCCGTGTCTACCGATGCGCCAAGTTCCTATTCATCGCGGCTCTGTTTGTCGTCTTGCTCATGAACACCCACAACCTGCTCACCTCCTTCCAGAGGAACGAGCTTACTGATCGCCGCTTCATCAGCCTCAACAAGTGCCCGGCCTGCTTCGGGACCAGTTGGTGTCGCAAGTTTACAAACGGCCAGGTCACCTTTGAGACATGGGGGCGGCTACGCTTTCTGGACTTCTTTAACGTGAAAAACGTTTACTTTGCTCAATATGGTGAGCCCAGGGAAGGCACGCGGAGGGTGGTGCTGAAACGCCTGGGCTCCAACACAGAACTTGCAGAGATCGATCAGAAGATATGCAAGAGGGCCACGGGAAGACCTCGCTGCGACATCGTCCAAGCCATGTACAAAACGGAGTTTGCCCGGCTCAACGGGGACGTGAGGTTGCTGACACCCGAGGTAGTGGAGGGCTGGTCGGACATGGTGCACTGCCCCTCCCAGAGACTCCTAGATAGGGTGGTCAGGAGGTATGCCGAGACCAAAGACTCTGGAAGCTTCCTCTTGAAGAATCTAAAGGATACCGAGAGGATGCAGCTACTGATGACGCTGGCGTTCAACCCGGAGCCTTTGGTGCTGCAgAGCTTCCCTTCTGACGAGGGCTGGCCGTTCGCCAAGTACCTGGGCGCTTGCGGTCGCATGGTGGCCGTGAACTACGTTGGCGAGGAGCTGTGGAGCTTCTACAACGCTCCCTGGGAGAAGCGCGTGGATTTGGCCAAGCAGCTGATGGACATCGCCGAGCAGCTCACCAACAACGACTTCGACTTCGCTCTGTACCTGCTCGACGTCAGCTTCGACAACTTCGCCGTCGGCCCGCGGGACGGAAAGGTCATCGTCGTGGACGCAGAGAACGTCATCGTGGCCGACAAGAGGCTGATCAAGCAGAACAAGCCGGAGAACTATGACGTGTGGTACGAGAGCCGCTACGAAGAATGCGACAAGGAAGCCTGCCTCTCGTTCTCCAAGGACATCCTGTGCTCGCGCGTCACCGTCGACCACAACTACTACGCCATCTGCCAGAACCTGCTGTCACGCTTCGCCACGTGGCGCGGAACCACCGGCGGCCTCCTCCACGACCCGCCCCCTGATGTGGCCCGAGACGGCCATCTCGCAGCGCTGCTGGACGAGTGCGCCAGGCCTCAGAAGCACTTCGGCCGCTTCCAGGCAGCCAAGGAACTGCGCGAGTACCTCACACAGCTAACGGAACAAGCTAGCGCAAAGAGGTAGTACACGGCGAGAGGCGGACTTTCTCTGCCCCCAGGACAACACAGATACAAACTCAGCCTCGTTAAAGTAAAGCAGCAGTGCTCTGAGAcgtttcattattatttttttggagtTGCTGCCTGCGGAATGTCGTAGCTTTGACAGATGCTCATTAAAGGAGTTTTGCACATGGGCCTGGCTGAGAGCACTGGGTGAAGAGCTGcagaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttgcgCTGATGCTAATACAGGAGCCTTGTTAGCGGTAATGGGGGTGTGCGAGGCCCACTTGCTCCGTCTGGCCTCTGATCACAATCTTCTAATGaggtttatgtttaatttattgagGCTCATGCAGAGGAACGACCCCTAAACAGAGGCCCAGGATCGCGAGACAAAGcctcattttgtttttagtgtttGTTATCATGAGATGTCTTGTTGTTTCATGTCGGGAGAAAATGttgcgctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86893 lncRNA downstream 82148 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 85255 29213553 ~ 29215051 (-) True G73318
TU86818 lncRNA downstream 104139 29128055 ~ 29196167 (-) True G73247
TU87006 lncRNA upstream 217178 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 284684 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 348270 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 388169 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 389976 29712893 ~ 29713446 (-) True G73458
XM_034303995.1 mRNA downstream 128385 29150521 ~ 29171921 (-) True usp33
XM_026936482.2 mRNA downstream 152814 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA downstream 152947 29131186 ~ 29147359 (-) True zzz3
XM_026936498.2 mRNA downstream 222870 29055012 ~ 29077436 (-) True pigk
XM_034303525.1 mRNA downstream 382154 28913679 ~ 28918152 (-) True LOC113540041
XM_026936180.2 mRNA upstream 10202 29333119 ~ 29336703 (-) True chst2a
XM_034303445.1 mRNA upstream 36583 29359500 ~ 29371526 (-) True pcolce2a
XM_026936950.2 mRNA upstream 36583 29359500 ~ 29371522 (-) False pcolce2a
XM_026937224.2 mRNA upstream 119198 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303512.1 mRNA upstream 138124 29461041 ~ 29466020 (-) True kcnmb2
TU86878 other downstream 147925 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 415341 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 415341 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 418142 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 647881 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 200477 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 200806 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 201592 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 202072 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 241685 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile