RNA id: XM_034304145.1


Basic Information

Item Value
RNA id XM_034304145.1
length 9077
RNA type mRNA
GC content 0.48
exon number 40
gene id chd8
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33174474 ~ 33249659 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGATGAGACTCGGACACGCGCTTTTCCGCCGTTGCTGCTGGAGGGTAGTTCCTGCTCTGCGCTAGCTGTTTCCAGTAATCGTGTTGGAGAGGGAGAAAGCCATGTGTGTCGATGTGAAGAACCTCCTTCTTCTTCAGTAGCCCATCAGAGGAGTGTTTAAGGGCGGTGTGGTATTCACTCAGAGAGCACAGAGGAAGGAGAGGGAGAAGTTTGTCTCTGGCTCAGTGCTCCTCAGTGCTCCTCAGTGCTCCTCAGTGCTCCTCAGTGCTCCTcagtgctctcacacacacctgaggtTCACCTGGCCGAGGCTGATGGAGGAGTGACCGCAGGGCCTGCTTCACCGCATCAGCTGGAATATGGCAGATCCCATTATGGACCTGTTTGATGATTCACCACTGTTTAACCTGGATTCCCTGCCAGAAGATACCTTTTCTCAGGGTTCCTCAGACCCAGTTGAGGAGGCTCTGAAGCTGGCCCTGGGCCAGGTGGATCCCCCATTAGACTCAGACTCAGCCCCAGACACCAGTGTCCCTGTCCTTAGTGACAATGCCCAAGCGCCACTCACAGCCACCACCACCATCTCTTCTGTTCCACCTAAAACACACCCAGTAAGCCAGGTGCCACTCTCACCCGCTGCTTCAGCCCCAGTTCCCATTCAGACAGTACCCCAGACTTCTGTTCCCATCGTCAGCAGTAGCAGTGGTTCCACCGCCGTTCTTCTGAGCTCCCCTTTGGCTGTGTCAGGGTCTCAAGTTGCTCCACAACAGCTGCAACCCCAACACCTTCTTACGCAACAGGCGGCAGGACAGGCAGCCCCAAAAATAGTGATTCTGAAGAGCCCTCAGGGTCAGGCCCAGGTACTGCAGAGCGTAGCAGGAGCTGCAGGCACTGCTGGGAAGCTCACCATTGCACGAGTGGTGACAGGGACACCTGTAAGACCTGGAATGTCCATCGTCTCGGGAGGGACAGTATTAAATGCTACACAGTCTGCACAGGGACAGGTGAAGGTGGGGACAGGTGTCCAGAGGTTGGTACAGACGCCTAATGGACCTGTGAAGCAGGTGCTGCTGACCTCTTTGCCCCAGACTCATGTCCAGTTACCTGCGCAGACGCAGATTACGCAGACAGAGATGCCAAAGTTGCAGCTTCAGACGCAAGTCCAGCCAGCACAGGTGCCGATACAGACACAGGTCCAAGAGCAGGTTGCTGGAAGTACAGCGGCAGCCCAAACGCAAGGTGTCACCCTGTCCACGGTAGCACAGCAGGCTGAGCCTAAGAGAATCACACTGGTGCTGCAGCCGCCTTCTCAGGGTGGGACGAACCAGACCGGTGCAGTGACGGTTGGTGGCAATCCATCAGCAGGAGCTGGACAACAGGGTCAGCAGCCCAGGCTTGTATTGGGCTCTCTCCCGGGGAAATTAGTCCTTCAGGGTGGCCAGCTGGCAGCGCTTACCCAGGCTAGAGCAGGCCAGACCGGGGCACAACCAAAGGTGCTCACTATCCAGCTTCAAGTACAGCAGCAGCCCAACCAGCAGGGAGCCAAGTTTCAGCTAGTTTCTGGTACCGCGAATGCTAGTGGCTGCCACCAAGTCGTCCAGGTTTCTCAAGGCCAGGGAGCACAAAGACTGGCAGTGCCCGTTAAACTCCTGCTGCAGCAACAGACAAGCTCAGCTTCTTGTTCTGGTGGTGCAGTTTCGGTGGTGAAGGTCATCAATACCTCAGCTGGATCTTCTGCCAGCTCCACACCTGCCTCGCAGGGTTTACGTATCGTCAAGGCCACTGAGCCCTTGCGGAAAGTGGAGACTCTGTGTAAGCAGGAGAAGGCCAATCGAATTGTGGCTGAGGCCATCGCTCGGGCTAAAGCCCGTGGCGAGCGGAACATCCCACGGGTGCTCAGTCAGGATGAATTTCCTGCTAGACAGACTTCTATTGACCAGGATGGTGTTGCAAGTCCTACTGGGGCCAAGAAGAAAAGTGCAGGAGGGAGCAAGAAGAAGAGCCCTGCACTGGGTGCAGCCACTGTGAAAGCTGCAGTCGGAGAAAAGAAGGTTAAGGTGAAGAGTCCTGGATCTGCAGTGGCTGGAGGAGGCGGAGGCTGTAAGAGTAAAGGGAAAACAAAGCCCAAcACCATCACTCTAGTAGGTggtaaaaaaaggaaaagaaatgcaTCTTCAGATCATTCAGATGGAGAACTGAACACTCCTCTCACACAGGAAGAAAATCTGTCTCAGATGAGACGTTCTAATCGTCAggtgaaaaggaaaaagtaCACAGAGGATTTAGATATTAAAATCacagatgatgaagatgagcCAGGTGAAGATGTGGATGTGACCACCCCAGCAGCCATACTGTCTACAGCACATTCTCAGTCTATGGGGACTTCATTCCAAGAGCTAGAAGGGGATGGCCTTCCCAGCATGCAGTTCTTCGTGGAAAACCCAAGTGAAGAAGATGCAGCGATTGTAGATAAAGTTTTGTCTATGCGCCTTACCAAAAAGGAGGTATCTCCAGGCCAGTATGCCAATGTGGAGGAATTCTTTGTCAAATACAAAAACTACTCATACTTGCACTGTGAATGGGCCAGTCTGGAACAACTTGAGAGGGACAAGAGGATCCACCAGAAGCTGAAGAGATTTAAGGCTAAACAGTCTCAAATGAGAACCTTCTTCCAAGAGGATGAGGAGCCTTTCAATTCGGATTATGTAGAGGTGGACCGCATCCTGGATGAATCCCATAGTGTGGACAAAGAAAATGGAGAGCCGGTGGTGTACTACTTAGTGAAGTGGTGCTCTTTGCCCTATGAGGATGCCACGTGGGAGCTGAAAGAAGATGTAGATGAAGGGAAGGTGGAGGAGTTTAAAAGGATCCAGAGTCGCCAACCCAGAATCAAGAGACCTCCTCGCCCACCCGCAAGTGCATGGAAGAAACTGGAGCAATCACGAGAATACCGTAGTGGAAACACTCTGAGAGAATATCAGCTAGAGGGCGTCAACTGGCTACTTTTCAACTGGTATAACAGGCAGAATTGCATTCTGGCGGATGAGATGGGTCTTGGCAAGACCATCCAATCAATAGCCCTACTGTCTGAAGTATTTGCTACTGGAGTCCAGGGACCCTTTCTGATAATTGCCCCTCTCTCCACCATCACGAATTGGGAAAGAGAATTTTCCACATGGACAGAAATGAACGCCATTGTCTATCATGGCAGCCTGGCCAGCAGACAGATGATCCAGCAGTATGAGATGTACTGCAAAGATGATAAGGGGCACCTCATTCCAGGAGCTTATAAATTTGATGCTCTGATCACCACCTTTGAGATGATTCTGTCGGACTGCCCAGAACTAAGGGAGATCTATTGGCGTTGTGTGATCATTGATGAAGCACATCGCCTGAAGAACAGAAACTGCAAACTGCTTGACAGTCTCAAGATGCTGAATTTGGAGCATAAAGTGCTGTTAACAGGCACGCCTTTGCAGAATACTGTGGAAGAGTTGTTCAGTCTATTGCACTTCTTAGAACCTGCACAGTTCCCTTCGGAGACAGAGTTCCTGCGTGAATTTGGCAATCTCAAAACAGAGGAGCAGGTGCAGAAGTTGCAGGCTATTCTGAAACCCATGATGCTACGCAGACTGAAGGAGGATGTGGAAAAGAACTTGGCGCCAAAGCAGGAGACCATTATTGAGGTGGAGTTGACTGATGTGCAGAAGAAGTACTACCGTGCTATTCTAGAGCGTAACTTCAGCTTCTTGAGCATGGGAGCTAATCAGAACAGCAACGTCCCCAATCTTCTTAACACCATGATGGAGCTCCGCAAATGCTGCAACCACCCTTATTTAATCACAGGTGCTGAAGAGAAGATAGTGGCTGAACTTAGGGAGGTGTACAATGCCTCAGCTCCAGACTTCCACCTTCAGGCCTTGGTGCGCTCAGCAGGGAAACTGGTCCTTCTAGATAAGTTGCTGCCTCGTCTCAAGGCTGGTGGACACAAAGTGCTTATCTTTTCCCAGATGGTGCGCTGTCTCGACATTCTAGAAGATTATCTCATCCACAAGAGATATCTCTATGAACGCATTGATGGTCGAGTAAGAGGAAACCTTCGTCAGGCAGCCATCGATCGCTTCAGTAAGTCCGACTCTGACCGGTTTGTCTTTTTGCTGTGTACCCGGGCTGGAGGACTGGGCATTAATCTGACTGCTGCCGACACTTGTGTTATATTCGACTCTGACTGGAACCCACAGAATGACCTTCAGGCCCAGGCACGTTGCCATCGTATTGGCCAGTCCAAGGCAGTAAAGGTCTATCGTCTCATCACCAGAAACTCCTATGAACGGGAGATGTTGGACAAAGCTAGTTTGAAGTTGGGACTGGATAGGGCTGTGCTTCAAAGCATGAGCAGCAATAAAGATAATAATGTCAATGGGgttcaccaGTTCACCAAGAAGGAGATTGAAGATTTGCTACGAAAAGGAGCTTATGCTGCTATTATGGATGAGAATGATGAGGGCAACCGTTTCTGTGAAGAAGACATTGACCAGATCCTTCAGAGGAGAGCCACCACTATCACCATTGAGAGTGAGGGCAAGGGATCCACCTTTTCTAAGGCCAGCTTTGTGGCATCTGAAAATAGGACTGACATTGCTCTGGACGACCCAGAATTTTGGCAGAAGTGGGCCCAGAAAGCGGACATTGACTTGGACACCATAAACAGGAAGAATACTCTTGTGATTGATACTCCACGTGTACGAAAGCAGACACGACAGTACTCGTCTCTTCGTGGGGAAAGTGGTGATCTTTCAGACTTAGACAGTGATGAGGAGTATCCACCCCAAAACTCTCGGCAGGCCCGAGCCTCACGCCGCGCTGACCGTCACTCTGGTGGTGGCTACGGCCGCACTGACTGTTTCAGAGTGGAGAAACACCTGCTAATTTATGGCTGGGGACGTTGGCACGATATCCTGTCCCATGCTAGGTGTAAGCGTCGTCTTGGGGAAAAGGACGTGGAGACCATCTGCAGGGTCATCCTAGTCTTCTGTCTGCTACATTACCGTGGAGATGAAAACATCAAAAGCTTCATATGGGAGCTCATCACTCCTCCAGAGAATGGCCAGGAAccaaacacactcctcaaccacTCTGGTCTGTCCATCCCTGTGCCTCGTGGACGAAAAGGGAAAAGAGTCAAGGCTCAGAGCTCTTTTGATGTGCAAAAGGCAGAGTGGATCCGCAAGTATAACCCAGATACACTTTTGTTGGATGACAGCTATCGCAAGCACCTCAAACACCAGTGTAACAAGGTGTTGCTGCGAGTACGTATGCTGTACtacttgaaacaggaagttatTGGAGAACACGTGAATTCTATACTTGAAGGCGCTGACAGCAGGGATATTGACATTTGGCTGCCTGAGATGGAACAGCAGGATGTTCCATCAGGCTGGTGGGATGCAGAGGCTGATCGTTGTTTGCTTATCGGAGTGTTCAAACATGGATACGAGATGTATACTACAATGCGTGCCGATCCCTGTTTGTGTTTCCTGGAGAGATGTGGTCGCCCCGATGACCAGGACATAAAGGCTGAACAGCACTCAGCAGATCCAGATTTGAGAGATGGaggTGCCTATGACAAGTTTTCAGAGGATCCAGAGTTCAAGCCTGTAATAAGACACAGCAAAGAAATGTATGAAGAGACTGACCCCAGGAACATGGATGAGTTCTTTGTGGAGGATCACTCCACATATTCCACTGCTGTGCCAATTGAGGCACAATCCTCAGGATCTATGGGGAACTGCTACTGGCCTACAAGCTCCTCCCTCACAGCTCGACTACGGCGGCTAATCACAGCGTACCAGCGCAGCTACAGACGAGAACAACTCAAGATCGAGGCAGCAGAAAAAGGAGATCGACGACGCCGGCGCTGTGAACAGGCCACCAAACTCAAAGAGCTTGCACGACAAGAGCGACAGCAAAGGTGGACTCGTAGAGAAGAGTGCGACTTTTATCGGGTGGTGTCCACATTTGGTGTGGAACGCATAAAGACTGAGGTGGGAACCCAAGAGGGTAGAGAGGCCAGACTGGACTGGACACGTTTCCGCACATTTGCAAGACTAGACAAGAAAACTGATGAGAGTCTTACCCGATACTTCCATCGCTTTATGGCTATGTGTCGCAGGGTCTGTCACTTGCAGCCTGCCCGTGGAGAGGAATCTCCAGATTTGTCCCACTCTCTAGCACCCATCACCGAGGAGCGAGCCTCACGAACACTGTACCGAATAAGCCTGTTGACCCGCCTACGTGAGCTCGTCCTTCCTCATCTCTCCCTAGAGGAGCGCCTTGCCCTGGCACCACCCAGCTCTGACCTGCCCAACTGGTGGCGTACCCCACAGCATGATCATGAACTGCTCCTAGGTGCTGCCAGCTGTGGCGTAAGCCGCACAGAGCATTACATATTCTCAGACTCTCAGTTCTCGTTTATCCAAGCCCATCATGAGTATGTGCAAAAGCAGCAAGCATGCCTTGCTGCACAAACCCTCACACACAGCCCACCACAGCAGGGAGACAATGTTAGAGAAGTAAAAATTGGTGATAAAAACCAAGTTTTGGCATCGATTTGCTCATCAGCCCTTCCAGCCATACCATTCTCTCACTCTGAAGGCAAAAGGAGAGAACAAGTAGGCTGGTCCTGGAATAAAATCAGCGGCGGGGGACCCAGAGGGGGTGAAAGGAAACAAGGGGAGACAGATGGAGGGCCTTCagactctgattctgattctgattctgaatcatCTACCTCTTCCCATCGCTCTCCTAGTTCAGATGTCAGTGGGGACAGTGATGCAGAGCGAGATGAGCAGGAACCACTGAAGATCTGTGATGCAGATGAAGAGAATAGCACCCTTTCATTCACTCCGTCCCAAGATGGCGCTCCACCAGAAACGCTCACTGACCCACTCAGAGTTGACTGGCCTaaggatcGTGTATTAATAAACCGAATAGATAACCTTTGTACTCTGGTTCTGACGGGACACTGGCCATCTGGGCGACGATATACCTCAGATCCTCAGCTTACTCTGGGTTACGATGAGCAGGGGCTTGGAGATGACCTAGGCTACACGCGTATATCCCGCAAAGGCAACAGTACTCTCTCTGGAGAGGATGGAGAAGAAACAGAGTTTACTGTCAAACTCTTGAAAGAGGAAGGGCTGAAATTGACCTTCTCCAAACAGGCTCTAATACCTAATGGGTCAGCAAGAGAGACAAGTGGACGGCGAAGGCGCAGAGATCAAGAGTCATCAGATACAGAGGGAGTACTCTGTGCCCCTCGTAAAAGGGACCTGCCCAACTGGCTCAAAGAAAATCCTGAATATGAAGTTGAGGGTGACATGCTAGAGctgctggtgaACAGGACcaaaaggaaaaggagaaagaagagagcAGAAAAGGAACAAGCCCCAACTGGCAGTGAAAGAGTTAAGATTATAGACATGAAGACTGGCAAGAAGGTTCAGTATGGTGGGGTGTATGGACCTGCATTGCAGGACCTAAAGGAGTATCTTGAAGAGAATCCTGACCATGCAGTAGCACCAGAATGGGCAGACACCGTTCGCAACTCGGGCTTCCTGCCAGAACATTTCTTCCACCGACTGCTGACTCTGCACACCTCGATCTCCAGACAGAGCCACAATTACCTCACCAACCCTTCAGCCCAAACTGGCCCTCATCTGGAGGCAGGTGAAAATGAGACACTGGTTTCTGATGGGGCTTACATCATGGACGATGAAGATCTGGACAGTAGTGCTCTTACTACTTCTCACCACTTCCTGACTTCTACATATGATGCTAAGATGGAGGCTGGTTCTCTTGACATGGACAAAGGAGATGCTTTGTCACCGATTGGATATGATAGCTCTGATAGGGAAGCTATATTGGATGATGTGATTATGGCACctaaaaattcagatttttccTCATGCTCAGAAGATTGACCAGGTCTCATTCACCTGAGATTATGAAATTCTTTTATTGTGTCTACCCCTacactttatactttttttcttgctgcTTATAAGAAAttatgtttggtttttttttctctctctctcttcagttttgtcttAGTTTTATGGCGGCATTATCATATAATTTAACATGTATGATTGGCCCATTATGCAGACTCTAATCCCAATAAACTGTATGTACTCCTTGTCTGTTAAACTGTTGTTCAGCATTCCCTTCATGTTCTGTGGCTGTGGGGAACCTCTGGCTGGACTGTCTGTGGAATGGATTGCTGAAGggttcatatttatattttgagcTGAGCCATGGTGGTACCTCAGTCTATTTTAACTGTGCCTATGTCACAAAGAACATGGCTTTAATTTTTTCCAGTGAATACTGCAACCAAGACTTTTTGGTGTATTGTACAATGTATAGTTGGtaatattaatgcaaaaattttgttcatttttgtttgatGAATTGACTCCAACTGTCTGATGTAAACATGAATAACAATCTACCATGAAATCagtcttctgtttattttgtggTGCACAAAATTCACACTGCACTTTTataagaataaatgaatgatacaAACATTCAGAACATCAGACAAAAAAGCAAATTTAGTCTGTTTGTAATGGTCATGCTGTTTTACATGACAATTTTGTCTTCATCACATGATGTTTTCTCTAGCCAAACAATGTTGGAAAAGGCCATGCTTAATCGAAATTTATACTTAAATCGATTAGTGTAGCTTGAATTTTGAGTCAGACATAAgttaatataataaagaaaaaatggttACCAATggaaaacattaattaaaatgttctttGTAAAATGTAGGAATACACATTTGTAATTACATGTTGTGTATATGAAGATTTCACTTATAGATTTCACACTGATAATTTAGCAATAATTGACAAAATGAGCAAGTCCAATAATTTCCAGTTCATTATGGCtttataaaggcaaaaaaaaaaaaaatctatgaatgTCTTTGATTGTTCTATAACACAAGCTATGTTTTCTGTCTCACGTCTGTCTTTCTGCTCTCCATACAT

Function

GO: NA

KEGG:

id description
K04494 CHD8, HELSNF1; chromodomain helicase DNA binding protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88580 lncRNA upstream 25421 33148537 ~ 33149053 (+) True G74750
TU88585 lncRNA upstream 38715 33130043 ~ 33135759 (+) True mmp14b
TU88574 lncRNA upstream 48590 33125668 ~ 33125884 (+) True G74747
TU88509 lncRNA upstream 150143 33023976 ~ 33024331 (+) True G74686
TU88495 lncRNA upstream 249739 32896804 ~ 32924735 (+) True G74672
XM_034303675.1 mRNA upstream 26043 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA upstream 26043 33137051 ~ 33148431 (+) False mmp14b
XM_034303860.1 mRNA upstream 854567 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 1069183 32081919 ~ 32105291 (+) False LOC113540131
XM_026944648.2 mRNA downstream 7570 33257229 ~ 33259292 (+) True gpr25
XR_004577922.1 other upstream 247460 32926616 ~ 32927014 (+) True LOC117596970
LOC117596944 other upstream 293109 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 426681 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 431337 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 431504 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile