RNA id: XM_034304150.1


Basic Information

Item Value
RNA id XM_034304150.1
length 2213
RNA type mRNA
GC content 0.49
exon number 13
gene id si:dkey-127k13.1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26614602 ~ 26628337 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTgaatgcacagagagagagagagagtaaacacTTCAAATATAAACAGTACGTATCTGTTTTGTTATTACGTAAATTGTCGtggaattatattatatttgataaAGCAGTGATGCAGAATGATGTTCCTGGGAAAAAGTTGAGACATGTCAACATGAGCTCCTCAGAAAAATACTGCCGTAACGCACGACGCCAAAAAATCCCAAAACGGCACACTCCTGTTTCACCGGAGACGAACGCTGATCCTCCCTCCAAGTCACACACTGTCCCTTCTGCAGGAGCTAAGAAGAAAACAAGAGGAAAAGCAGCGAGAGCTGTCGCACAGCATCCTGACACCGAGCCCTCACCTGTCTCACccctctcacctgtctcacacacacccacacttcAAACACCAGCAACAAATGGACATTTGCCTCAAAAAACCGCCACGTGTTCCCTGAAAAATGGTCctaaaggaaggaaaaagaagactGAGAAGAGAGATAGAAGAGAGACTGATGAGAGATCAGATCTTTATCCTGATTCTGATCTGACACAGACTGAGCAGCAAAAAGCCAAAAAACCACCAGCACCACACGCTCAGCGATCGAAAAGGGCTGCTAAAGAAACCTCCACACACGCTACACTATTATGTCCGAGCTCTCAGCAGGACACGCCCATCTCCACGCCCAAATCTGATTCAGGGGTGAAAACGCCGAGGCGACAGCGAGGGTCCCGACCCAATTCCCGTCTCAGCTCCACTCCACAGTGCAGCAGGACGCCGCTGACTGAGCCGGAGATCAGCCCCGTGATGcagAAAACGTTGCCAAAAAAGAGACTTCGATCTCAGAATCCTGAAGCTCAGCAAAAGAGGAGGACGAGGAAGAAGGCGGAACAGGAAGTGCGCGACACGCCTCCAGTCAAACGTCAAAGAAAGAAGAGATTGGCAAAGGCGGAGCTTCCCCACAACCAGCGAATCAGAACGCGCTTTGTGCTGCAGGATTCTGAGCATCATGAGCCAGAAGAGACGCTCTCCTCCTCAGACCTGTCCATCGAGCTGAGTGTACAGGAGGACaagctttctctcacacacgctctctccctggaggacgaggaggatgaggaggacgaggaggacgAAGAGCTGCCGAGTTTCTTACAGCAGATCAGCCAGAAACCTTCCTCAATCAGAGaggggctgtgtgtgtggtgtaaactGAGGAAATACCCCTTCTGGCCAGCCATGgttaaGAGTGTGAACCGTAAGACTAAGAAGGCCAGCATTGTGTTTATTGACCAATTTCTCTTTGATAAGAAGAGAATATGTAAAGGTTTATCAGTGTCTCTGAGGACATTGAAGCCGTTTGACTGTGAGGAATCTCACCGCTTTGTGgacATAGCCAAAGAGAAGTATGGTAAATCCATCATGTGGTGTCTGGAGCTCATCTCTGACTACAGGATCCGCATTGgttgtgGCTCATTTGCTGGCTCAATTATTGAGTACATTGCTGATGATATCAGTTACCCGTTGAGGAGTGAGTACTCGAAGGCTTCATCAGATCTGCTGTCTCCCACTCAGAGTTTGATGGAGCAGCAGGATGTAGACTCTGAGCTTCAGGACCTTGAGGAACACCCTGACTTTTTTCAGGACGTCCACATGGAGAAAAAAGTCCTCCCTGACCGCATGCAGGCCGCCAGGAACCGTGCCAACCAGAGACTGGTGGAGTTCATCGTCAGGAAACGAGGAGCGCAGAATCGCTTACTGGCGGTGATCAGTGGTCAGGAGGCGTCCAGGTGGCTGCAGGCTCTGCACAGCTCCAGCCGCTTGATGGTGAGCCAGGTGTACCTGGAGGACGAGAAGCAGGTGGATGAAGTGTACCGCTACCTCGAAGAGCTGTGTGAGAGTGTCGCTAAAGCTAACCCAAGACTGGAGAACCCGGACCGGATCAGCTTCATCCTGGACGTCCTCTTCCCCGAGgctttGATTTGTGCGATAGCTGCAGTGGATTGTCTCAGTCTGGACAAAGCAGAGGAGAAATATCGCCAAGGACCTCGCCATAGCAACagagaaagacaggagtTTGACCTGATGATTGAGCAGCAGATGAAGCTGAAGGCAGCAGGGTGGTCACTCTGAACACCACTATGTTTActgcattattattgttattattattattattttcactcgTTAATgggaaatacatttttaataaaataatcatgatgtca

Function

GO: NA

KEGG:

id description
K23386 PWWP3, MUM1; PWWP domain-containing DNA repair factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84702 lncRNA upstream 63576 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 150288 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 319620 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 388187 26225431 ~ 26226415 (+) True LOC117597184
XR_004578086.1 lncRNA upstream 389238 26224918 ~ 26225364 (+) True LOC117597183
TU84751 lncRNA downstream 39425 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 156235 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 179720 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 244339 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 414366 27042703 ~ 27042912 (+) True G71819
XM_026936989.1 mRNA upstream 2383 26610170 ~ 26612219 (+) True LOC113540476
XM_026936990.1 mRNA upstream 2383 26610170 ~ 26612219 (+) False LOC113540476
XM_026936988.1 mRNA upstream 2383 26610170 ~ 26612219 (+) False LOC113540476
XM_034304002.1 mRNA upstream 6135 26597247 ~ 26608467 (+) False dapk3
XM_026937103.2 mRNA upstream 6140 26597247 ~ 26608462 (+) True dapk3
XM_034303686.1 mRNA downstream 4472 26632809 ~ 26642234 (+) True ing5b
XM_026936650.2 mRNA downstream 4480 26632817 ~ 26642234 (+) False ing5b
XM_026936646.2 mRNA downstream 14763 26643100 ~ 26663715 (+) True pak2a
XM_026936648.2 mRNA downstream 14763 26643100 ~ 26663715 (+) False pak2a
XM_026936647.2 mRNA downstream 22238 26650575 ~ 26663715 (+) False pak2a
TU84616 other upstream 238823 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 250369 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 321818 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 35634 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 484811 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 860916 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 928180 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 929428 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile