Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402827.2 |
| length | 896 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC113527002 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 6802456 ~ 6805176 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU71609 | lncRNA | upstream | 6758 | 6789220 ~ 6797109 (+) | True | G60529 |
| TU71586 | lncRNA | upstream | 118035 | 6684336 ~ 6685832 (+) | False | LOC113547228 |
| XR_003404802.2 | lncRNA | upstream | 152021 | 6648782 ~ 6651846 (+) | True | LOC113547233 |
| XR_004578118.1 | lncRNA | upstream | 180216 | 6622836 ~ 6623651 (+) | True | LOC113547253 |
| TU71549 | lncRNA | upstream | 207266 | 6595126 ~ 6596601 (+) | True | LOC117597080 |
| TU71618 | lncRNA | downstream | 4990 | 6810166 ~ 6812401 (+) | True | G60536 |
| TU71634 | lncRNA | downstream | 71855 | 6877031 ~ 6895222 (+) | True | G60548 |
| TU71641 | lncRNA | downstream | 81975 | 6887151 ~ 6906198 (+) | True | G60554 |
| XR_004577959.1 | lncRNA | downstream | 141149 | 6946325 ~ 6951805 (+) | True | LOC117596999 |
| TU71678 | lncRNA | downstream | 210911 | 7016087 ~ 7033495 (+) | True | G60580 |
| XM_026947458.2 | mRNA | upstream | 35131 | 6759401 ~ 6768736 (+) | True | sharpin |
| XM_026947533.2 | mRNA | upstream | 48067 | 6740573 ~ 6755800 (+) | True | gpaa1 |
| XM_034304127.1 | mRNA | upstream | 48067 | 6740791 ~ 6755800 (+) | False | gpaa1 |
| XM_026947534.2 | mRNA | upstream | 48067 | 6742675 ~ 6755800 (+) | False | gpaa1 |
| XM_026947535.2 | mRNA | upstream | 66668 | 6733584 ~ 6737199 (+) | True | LOC113547276 |
| XM_026913759.2 | mRNA | downstream | 431894 | 7237070 ~ 7334917 (+) | True | LOC113526581 |
| XM_026914101.2 | mRNA | downstream | 591634 | 7396810 ~ 7405618 (+) | True | LOC113526768 |
| XM_026913509.2 | mRNA | downstream | 618384 | 7423560 ~ 7442254 (+) | True | LOC113526462 |
| XM_026913850.2 | mRNA | downstream | 677052 | 7482228 ~ 7530675 (+) | False | ss18 |
| XM_026913851.2 | mRNA | downstream | 677053 | 7482229 ~ 7500704 (+) | True | ss18 |
| XR_004578001.1 | other | upstream | 207306 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 373290 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| trnat-ugu_2 | other | upstream | 660230 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 664495 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| TU70896 | other | upstream | 1207741 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_003402765.2 | other | downstream | 1250880 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578049.1 | other | downstream | 1890176 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 2089294 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578067.1 | other | downstream | 2953284 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 3002145 | 9807321 ~ 9832280 (+) | False | gal3st3 |
