RNA id: XR_004577961.1


Basic Information

Item Value
RNA id XR_004577961.1
length 612
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC113527002
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6802456 ~ 6805176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTCTAGATGGCTGGGTGAAATTTGAAGGACGTTGCTTCAAGTATCAGGCCACCAGCATGGACTGGGCTTCTGCTGAGAAATACTGTCTGAATCTCGGGGCAAACTTGATCTCAATACACAGCGAAGGTGAATATCAGTGGTTCAAGTCCTTTGTCCTTGCTGCAGACCCCAAGAACAATCCAACATGGATCGGCCTTAATAACTGTCAGAAGAACAACCACTGGTTGACCAACCACTGACCAAATTGATTTTCACCAAGTGGAGTCCAACTCAACCCAATTTTGTAGGTACAGAGTGCTGTGTGGTAAGTGAAAACTTCTTACATAGCTGTGTTAAGAATCTATCTTTTATAACTTCAGGGTTtggtgattcattttcaattaaaatgttaTGGCATGTTTAAATCCATATTCTTTGCTGTGTCTGCAGATGAGAAGGACTGGCTTGATGCTCCATGTGAGTGGACCTATCCCTTTGTTTGTGTCAAGAGGCCTAACTGAAATGCTCCCAGCCTCAACTTGGCAACTATAATACAATGTTGGATTTTTCTTCCTTGTCACTGATGGATTTACAAAAACCTCACTGTGGCAAGTTACCAtaatttcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71609 lncRNA upstream 5347 6789220 ~ 6797109 (+) True G60529
TU71586 lncRNA upstream 116624 6684336 ~ 6685832 (+) False LOC113547228
XR_003404802.2 lncRNA upstream 150610 6648782 ~ 6651846 (+) True LOC113547233
XR_004578118.1 lncRNA upstream 178805 6622836 ~ 6623651 (+) True LOC113547253
TU71549 lncRNA upstream 205855 6595126 ~ 6596601 (+) True LOC117597080
TU71618 lncRNA downstream 4990 6810166 ~ 6812401 (+) True G60536
TU71634 lncRNA downstream 71855 6877031 ~ 6895222 (+) True G60548
TU71641 lncRNA downstream 81975 6887151 ~ 6906198 (+) True G60554
XR_004577959.1 lncRNA downstream 141149 6946325 ~ 6951805 (+) True LOC117596999
TU71678 lncRNA downstream 210911 7016087 ~ 7033495 (+) True G60580
XM_026947458.2 mRNA upstream 33720 6759401 ~ 6768736 (+) True sharpin
XM_026947533.2 mRNA upstream 46656 6740573 ~ 6755800 (+) True gpaa1
XM_034304127.1 mRNA upstream 46656 6740791 ~ 6755800 (+) False gpaa1
XM_026947534.2 mRNA upstream 46656 6742675 ~ 6755800 (+) False gpaa1
XM_026947535.2 mRNA upstream 65257 6733584 ~ 6737199 (+) True LOC113547276
XM_026913759.2 mRNA downstream 431894 7237070 ~ 7334917 (+) True LOC113526581
XM_026914101.2 mRNA downstream 591634 7396810 ~ 7405618 (+) True LOC113526768
XM_026913509.2 mRNA downstream 618384 7423560 ~ 7442254 (+) True LOC113526462
XM_026913850.2 mRNA downstream 677052 7482228 ~ 7530675 (+) False ss18
XM_026913851.2 mRNA downstream 677053 7482229 ~ 7500704 (+) True ss18
XR_004578001.1 other upstream 205895 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 371879 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 658819 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 663084 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1206330 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 1250880 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1890176 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2089294 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 2953284 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 3002145 9807321 ~ 9832280 (+) False gal3st3

Expression Profile