Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403988.2 |
| length | 812 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC113539942 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 17446761 ~ 17453705 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78235 | lncRNA | downstream | 42946 | 17402622 ~ 17403815 (-) | True | G66056 |
| TU78204 | lncRNA | downstream | 135701 | 17310387 ~ 17311060 (-) | True | G66028 |
| TU78151 | lncRNA | downstream | 137677 | 17254830 ~ 17309084 (-) | True | G65984 |
| TU77958 | lncRNA | downstream | 351560 | 17080164 ~ 17095201 (-) | True | LOC117597208 |
| XR_004578115.1 | lncRNA | downstream | 351605 | 17080215 ~ 17095156 (-) | False | LOC117597208 |
| TU78544 | lncRNA | upstream | 117626 | 17571331 ~ 17637986 (-) | True | G66274 |
| TU78553 | lncRNA | upstream | 121070 | 17574775 ~ 17575306 (-) | False | G66274 |
| TU78558 | lncRNA | upstream | 121238 | 17574943 ~ 17637986 (-) | False | G66274 |
| XR_004577990.1 | lncRNA | upstream | 138134 | 17591839 ~ 17592470 (-) | True | LOC117597047 |
| TU78569 | lncRNA | upstream | 138137 | 17591842 ~ 17592247 (-) | False | LOC117597047 |
| XM_026936080.2 | mRNA | downstream | 2573 | 17439477 ~ 17444188 (-) | True | rnaseka |
| XM_026936062.2 | mRNA | downstream | 103479 | 17329547 ~ 17343282 (-) | True | cd99l2 |
| XM_026936063.2 | mRNA | downstream | 103482 | 17329547 ~ 17343279 (-) | False | cd99l2 |
| XM_026936064.2 | mRNA | downstream | 103483 | 17329547 ~ 17343278 (-) | False | cd99l2 |
| XM_026936066.2 | mRNA | downstream | 103485 | 17329547 ~ 17343276 (-) | False | cd99l2 |
| XM_026936075.2 | mRNA | upstream | 79460 | 17533165 ~ 17536773 (-) | False | zgc:92664 |
| XM_026936073.2 | mRNA | upstream | 79460 | 17533165 ~ 17536773 (-) | True | zgc:92664 |
| XM_026936076.2 | mRNA | upstream | 79460 | 17533165 ~ 17536770 (-) | False | zgc:92664 |
| XM_026936033.2 | mRNA | upstream | 86885 | 17540590 ~ 17553140 (-) | False | ache |
| XM_026936034.2 | mRNA | upstream | 86885 | 17540590 ~ 17553140 (-) | True | ache |
| TU78241 | other | downstream | 2587 | 17439493 ~ 17444174 (-) | False | rnaseka |
| TU78232 | other | downstream | 44297 | 17400594 ~ 17402464 (-) | True | G66053 |
| TU77801 | other | downstream | 841044 | 16604108 ~ 16605717 (-) | False | bmp15 |
| TU77497 | other | downstream | 1023597 | 16419310 ~ 16423164 (-) | True | tnfsf12 |
| XR_003404041.2 | other | downstream | 1375069 | 16055022 ~ 16071692 (-) | False | acox3 |
| TU78578 | other | upstream | 140744 | 17594449 ~ 17634868 (-) | True | G66281 |
| trnas-uga | other | upstream | 317445 | 17771150 ~ 17771231 (-) | True | trnas-uga |
| TU78662 | other | upstream | 338521 | 17792226 ~ 17830126 (-) | False | map11 |
| XR_003404075.1 | other | upstream | 461925 | 17915630 ~ 17915771 (-) | True | LOC113540701 |
| XR_003404117.1 | other | upstream | 1563118 | 19016823 ~ 19016953 (-) | True | LOC113540749 |
