Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404004.2 |
| length | 310 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | LOC113540179 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 27483820 ~ 27487711 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85362 | lncRNA | upstream | 23623 | 27459670 ~ 27460197 (+) | True | G72012 |
| TU85353 | lncRNA | upstream | 54598 | 27428419 ~ 27429222 (+) | True | G72005 |
| TU85334 | lncRNA | upstream | 77422 | 27405579 ~ 27406398 (+) | False | sgip1b |
| TU85328 | lncRNA | upstream | 102748 | 27380848 ~ 27381072 (+) | True | G71980 |
| TU85325 | lncRNA | upstream | 112142 | 27371473 ~ 27371678 (+) | True | G71977 |
| TU85494 | lncRNA | downstream | 65416 | 27553127 ~ 27555706 (+) | True | G72118 |
| XR_003404048.2 | lncRNA | downstream | 68374 | 27556085 ~ 27559110 (+) | False | LOC113540592 |
| TU85491 | lncRNA | downstream | 68493 | 27556204 ~ 27559102 (+) | False | LOC113540592 |
| TU85492 | lncRNA | downstream | 68493 | 27556204 ~ 27559427 (+) | True | LOC113540592 |
| TU85493 | lncRNA | downstream | 68493 | 27556204 ~ 27559013 (+) | False | LOC113540592 |
| XM_026936474.2 | mRNA | upstream | 6147 | 27468048 ~ 27477673 (+) | False | zgc:55943 |
| XM_034303667.1 | mRNA | upstream | 6147 | 27468283 ~ 27477673 (+) | True | zgc:55943 |
| XM_026936475.2 | mRNA | upstream | 6147 | 27468283 ~ 27477673 (+) | False | zgc:55943 |
| XM_026937314.2 | mRNA | upstream | 17315 | 27460268 ~ 27466505 (+) | True | imp3 |
| XM_026936528.2 | mRNA | upstream | 36572 | 27441509 ~ 27447248 (+) | True | fam78ba |
| XM_026935807.2 | mRNA | downstream | 8137 | 27495848 ~ 27508199 (+) | True | abi1b |
| XM_026935808.2 | mRNA | downstream | 8137 | 27495848 ~ 27508199 (+) | False | abi1b |
| XM_026936183.2 | mRNA | downstream | 22139 | 27509850 ~ 27517204 (+) | True | si:ch211-252f13.5 |
| XM_034303993.1 | mRNA | downstream | 46965 | 27534676 ~ 27546129 (+) | True | ap2m1a |
| XM_034304070.1 | mRNA | downstream | 74438 | 27562149 ~ 27582022 (+) | True | dvl3a |
| XR_003404108.2 | other | upstream | 370566 | 27113148 ~ 27113254 (+) | True | LOC113540738 |
| XR_003404105.1 | other | upstream | 819738 | 26663971 ~ 26664082 (+) | True | LOC113540735 |
| TU84616 | other | upstream | 1108041 | 26353189 ~ 26375779 (+) | True | LOC117597079 |
| TU84618 | other | upstream | 1119587 | 26353189 ~ 26364233 (+) | False | LOC117597079 |
| XR_003404060.2 | other | upstream | 1191036 | 26288294 ~ 26292784 (+) | False | zgc:66427 |
| trnat-ugu_5 | other | downstream | 1542 | 27489253 ~ 27489325 (+) | True | trnat-ugu_5 |
| XR_003404069.1 | other | downstream | 68806 | 27556517 ~ 27556648 (+) | True | LOC113540695 |
| XR_003404070.2 | other | downstream | 70054 | 27557765 ~ 27557902 (+) | True | LOC113540696 |
| trnat-ugu_6 | other | downstream | 132894 | 27620605 ~ 27620677 (+) | True | trnat-ugu_6 |
| trnat-ugu_8 | other | downstream | 133600 | 27621311 ~ 27621383 (+) | True | trnat-ugu_8 |
